Analysis of interatomic Contacts of Structural Units in PDB entry:
8P50


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P50 entry

There are 2 chains in PDB entry 8P50 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4MET 1591
B
 MET 18LYS 178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 8P50. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 22Right-handed alpha
Helix 2
AA2
A
35 55Right-handed alpha
Helix 3
AA3
A
55 64Right-handed alpha
Helix 4
AA4
A
75 86Right-handed alpha
Helix 5
AA5
A
93 132Right-handed alpha
Helix 6
AA6
A
140 147Right-handed alpha
Helix 7
AA7
A
147 170Right-handed alpha
Helix 8
AA8
A
176 202Right-handed alpha
Helix 9
AA9
A
203 216Right-handed alpha
Helix 10
AB1
A
225 234Right-handed alpha
Helix 11
AB2
A
283 291Right-handed alpha
Helix 12
AB3
A
296 301Right-handed alpha
Helix 13
AB4
A
314 321Right-handed alpha
Helix 14
AB5
A
322 324Right-handed 310
Helix 15
AB6
A
378 390Right-handed alpha
Helix 16
AB7
A
399 405Right-handed alpha
Helix 17
AB8
A
418 425Right-handed alpha
Helix 18
AB9
A
465 489Right-handed alpha
Helix 19
AC1
A
489 495Right-handed alpha
Helix 20
AC2
A
500 517Right-handed alpha
Helix 21
AC3
A
520 525Right-handed alpha
Helix 22
AC4
A
541 558Right-handed alpha
Helix 23
AC5
A
561 573Right-handed alpha
Helix 24
AC6
A
574 576Right-handed 310
Helix 25
AC7
A
577 583Right-handed alpha
Helix 26
AC8
A
586 589Right-handed 310
Helix 27
AC9
A
590 598Right-handed alpha
Helix 28
AD1
A
598 623Right-handed alpha
Helix 29
AD2
A
635 653Right-handed alpha
Helix 30
AD3
A
654 658Right-handed 310
Helix 31
AD4
A
659 664Right-handed 310
Helix 32
AD5
A
665 674Right-handed alpha
Helix 33
AD6
A
675 698Right-handed alpha
Helix 34
AD7
A
725 731Right-handed alpha
Helix 35
AD8
A
735 740Right-handed 310
Helix 36
AD9
A
751 756Right-handed alpha
Helix 37
AE1
A
763 773Right-handed alpha
Helix 38
AE2
A
781 789Right-handed alpha
Helix 39
AE3
A
790 795Right-handed alpha
Helix 40
AE4
A
800 818Right-handed alpha
Helix 41
AE5
A
823 834Right-handed alpha
Helix 42
AE6
A
841 857Right-handed alpha
Helix 43
AE7
A
863 878Right-handed alpha
Helix 44
AE8
A
879 881Right-handed 310
Helix 45
AE9
A
902 906Right-handed 310
Helix 46
AF1
A
930 937Right-handed alpha
Helix 47
AF2
A
937 945Right-handed alpha
Helix 48
AF3
A
949 953Right-handed 310
Helix 49
AF4
A
985 988Right-handed 310
Helix 50
AF5
A
1052 1056Right-handed 310
Helix 51
AF6
A
1065 1070Right-handed alpha
Helix 52
AF7
A
1125 1152Right-handed alpha
Helix 53
AF8
A
1173 1175Right-handed 310
Helix 54
AF9
A
1176 1209Right-handed alpha
Helix 55
AG1
A
1218 1259Right-handed alpha
Helix 56
AG2
A
1260 1263Right-handed 310
Helix 57
AG3
A
1281 1289Right-handed alpha
Helix 58
AG4
A
1299 1308Right-handed alpha
Helix 59
AG5
A
1321 1332Right-handed alpha
Helix 60
AG6
A
1335 1358Right-handed alpha
Helix 61
AG7
A
1361 1374Right-handed alpha
Helix 62
AG8
A
1396 1429Right-handed alpha
Helix 63
AG9
A
1432 1443Right-handed alpha
Helix 64
AH1
A
1448 1454Right-handed alpha
Helix 65
AH2
A
1463 1473Right-handed alpha
Helix 66
AH3
A
1515 1528Right-handed alpha
Helix 67
AH4
A
1531 1536Right-handed alpha
Helix 68
AH5
A
1553 1558Right-handed alpha
Helix 69
AH6
A
1576 1589Right-handed alpha
Helix 70
AH7
B
29 40Right-handed alpha
Helix 71
AH8
B
71 82Right-handed 310
Helix 72
AH9
B
99 112Right-handed alpha
Helix 73
AI1
B
113 117Right-handed 310
Helix 74
AI2
B
135 143Right-handed alpha
Helix 75
AI3
B
144 148Right-handed 310
Helix 76
AI4
B
165 178Right-handed alpha
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There are 12 sheets in PDB entry 8P50. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 339first strand
Strand 2
A
345 349anti-parallel
Strand 3
A
358 366anti-parallel
Strand 4
A
375 377anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 339first strand
Strand 2
A
345 349anti-parallel
Strand 3
A
358 366anti-parallel
Strand 4
A
271 277anti-parallel
Strand 5
A
239 245anti-parallel
Strand 6
A
307 313anti-parallel
Strand 7
A
396 398anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 261first strand
Strand 2
A
264 267anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 436first strand
Strand 2
A
445 446anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 454first strand
Strand 2
A
459 463anti-parallel
Strand 3
A
744 745anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
720 722first strand
Strand 2
A
757 759anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
946 948first strand
Strand 2
A
973 979parallel
Strand 3
A
961 970anti-parallel
Strand 4
A
990 996anti-parallel
Strand 5
A
1022 1025parallel
Strand 6
A
1079 1086anti-parallel
Strand 7
A
1089 1101anti-parallel
Strand 8
A
1106 1110anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
946 948first strand
Strand 2
A
973 979parallel
Strand 3
A
961 970anti-parallel
Strand 4
A
990 996anti-parallel
Strand 5
A
1022 1025parallel
Strand 6
A
1079 1086anti-parallel
Strand 7
A
1089 1101anti-parallel
Strand 8
A
1117 1121anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1009 1014first strand
Strand 2
A
1042 1048anti-parallel
Strand 3
A
1032 1037anti-parallel
Strand 4
A
1060 1064anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1377 1379first strand
Strand 2
A
1509 1513anti-parallel
Strand 3
A
1500 1505anti-parallel
Strand 4
A
1489 1493anti-parallel
Strand 5
A
1477 1480anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1461 1462first strand
Strand 2
A
1546 1547anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 58first strand
Strand 2
B
61 68anti-parallel
Strand 3
B
19 24parallel
Strand 4
B
87 93parallel
Strand 5
B
120 126parallel
Strand 6
B
153 157parallel
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