Analysis of interatomic Contacts of Structural Units in PDB entry:
8P52

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P52 entry

There is 1 chain in PDB entry 8P52 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 4	LEU 2931

There are 98 helices in PDB entry 8P52. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	22	Right-handed alpha
Helix 2	AA2	A	35	55	Right-handed alpha
Helix 3	AA3	A	55	64	Right-handed alpha
Helix 4	AA4	A	75	86	Right-handed alpha
Helix 5	AA5	A	93	132	Right-handed alpha
Helix 6	AA6	A	140	147	Right-handed alpha
Helix 7	AA7	A	147	170	Right-handed alpha
Helix 8	AA8	A	176	202	Right-handed alpha
Helix 9	AA9	A	206	216	Right-handed alpha
Helix 10	AB1	A	225	233	Right-handed alpha
Helix 11	AB2	A	283	290	Right-handed alpha
Helix 12	AB3	A	296	301	Right-handed alpha
Helix 13	AB4	A	314	321	Right-handed alpha
Helix 14	AB5	A	322	324	Right-handed 310
Helix 15	AB6	A	378	390	Right-handed alpha
Helix 16	AB7	A	399	405	Right-handed alpha
Helix 17	AB8	A	418	425	Right-handed alpha
Helix 18	AB9	A	465	489	Right-handed alpha
Helix 19	AC1	A	489	495	Right-handed alpha
Helix 20	AC2	A	500	517	Right-handed alpha
Helix 21	AC3	A	520	525	Right-handed alpha
Helix 22	AC4	A	541	558	Right-handed alpha
Helix 23	AC5	A	561	573	Right-handed alpha
Helix 24	AC6	A	574	584	Right-handed 310
Helix 25	AC7	A	586	598	Right-handed alpha
Helix 26	AC8	A	598	610	Right-handed alpha
Helix 27	AC9	A	611	623	Right-handed alpha
Helix 28	AD1	A	635	653	Right-handed alpha
Helix 29	AD2	A	654	658	Right-handed 310
Helix 30	AD3	A	659	664	Right-handed 310
Helix 31	AD4	A	665	674	Right-handed alpha
Helix 32	AD5	A	675	698	Right-handed alpha
Helix 33	AD6	A	725	731	Right-handed alpha
Helix 34	AD7	A	735	740	Right-handed 310
Helix 35	AD8	A	749	756	Right-handed alpha
Helix 36	AD9	A	763	773	Right-handed alpha
Helix 37	AE1	A	781	789	Right-handed alpha
Helix 38	AE2	A	790	795	Right-handed alpha
Helix 39	AE3	A	800	818	Right-handed alpha
Helix 40	AE4	A	823	834	Right-handed alpha
Helix 41	AE5	A	841	857	Right-handed alpha
Helix 42	AE6	A	863	878	Right-handed alpha
Helix 43	AE7	A	879	881	Right-handed 310
Helix 44	AE8	A	902	906	Right-handed 310
Helix 45	AE9	A	930	937	Right-handed alpha
Helix 46	AF1	A	937	945	Right-handed alpha
Helix 47	AF2	A	949	953	Right-handed 310
Helix 48	AF3	A	985	988	Right-handed 310
Helix 49	AF4	A	1052	1056	Right-handed 310
Helix 50	AF5	A	1065	1069	Right-handed 310
Helix 51	AF6	A	1125	1152	Right-handed alpha
Helix 52	AF7	A	1173	1209	Right-handed alpha
Helix 53	AF8	A	1213	1259	Right-handed alpha
Helix 54	AF9	A	1260	1263	Right-handed 310
Helix 55	AG1	A	1281	1289	Right-handed alpha
Helix 56	AG2	A	1298	1307	Right-handed alpha
Helix 57	AG3	A	1321	1331	Right-handed alpha
Helix 58	AG4	A	1335	1358	Right-handed alpha
Helix 59	AG5	A	1361	1372	Right-handed alpha
Helix 60	AG6	A	1391	1396	Right-handed alpha
Helix 61	AG7	A	1396	1429	Right-handed alpha
Helix 62	AG8	A	1432	1443	Right-handed alpha
Helix 63	AG9	A	1448	1454	Right-handed alpha
Helix 64	AH1	A	1463	1473	Right-handed alpha
Helix 65	AH2	A	1515	1528	Right-handed alpha
Helix 66	AH3	A	1531	1536	Right-handed alpha
Helix 67	AH4	A	1553	1558	Right-handed alpha
Helix 68	AH5	A	1576	1599	Right-handed alpha
Helix 69	AH6	A	1600	1630	Right-handed alpha
Helix 70	AH7	A	1640	1643	Right-handed 310
Helix 71	AH8	A	1672	1691	Right-handed alpha
Helix 72	AH9	A	1709	1735	Right-handed alpha
Helix 73	AI1	A	1743	1757	Right-handed alpha
Helix 74	AI2	A	1766	1779	Right-handed alpha
Helix 75	AI3	A	1788	1809	Right-handed alpha
Helix 76	AI4	A	1837	1848	Right-handed alpha
Helix 77	AI5	A	1873	1907	Right-handed alpha
Helix 78	AI6	A	1981	1985	Right-handed 310
Helix 79	AI7	A	2028	2036	Right-handed alpha
Helix 80	AI8	A	2083	2087	Right-handed 310
Helix 81	AI9	A	2194	2211	Right-handed alpha
Helix 82	AJ1	A	2248	2252	Right-handed 310
Helix 83	AJ2	A	2339	2347	Right-handed alpha
Helix 84	AJ3	A	2358	2364	Right-handed alpha
Helix 85	AJ4	A	2365	2367	Right-handed 310
Helix 86	AJ5	A	2369	2374	Right-handed 310
Helix 87	AJ6	A	2529	2534	Right-handed alpha
Helix 88	AJ7	A	2538	2543	Right-handed alpha
Helix 89	AJ8	A	2544	2546	Right-handed 310
Helix 90	AJ9	A	2583	2587	Right-handed 310
Helix 91	AK1	A	2617	2625	Right-handed alpha
Helix 92	AK2	A	2683	2691	Right-handed alpha
Helix 93	AK3	A	2693	2705	Right-handed alpha
Helix 94	AK4	A	2822	2829	Right-handed alpha
Helix 95	AK5	A	2883	2889	Right-handed 310
Helix 96	AK6	A	2905	2915	Right-handed alpha
Helix 97	AK7	A	2916	2919	Right-handed 310
Helix 98	AK8	A	2925	2931	Right-handed alpha

There are 29 sheets in PDB entry 8P52. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	236	first strand
Strand 2	A	239	245	anti-parallel
Strand 3	A	271	277	anti-parallel
Strand 4	A	358	366	anti-parallel
Strand 5	A	375	377	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	339	first strand
Strand 2	A	345	349	anti-parallel
Strand 3	A	358	366	anti-parallel
Strand 4	A	271	277	anti-parallel
Strand 5	A	239	245	anti-parallel
Strand 6	A	307	313	anti-parallel
Strand 7	A	396	398	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	261	first strand
Strand 2	A	264	267	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	436	first strand
Strand 2	A	445	446	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	454	first strand
Strand 2	A	459	463	anti-parallel
Strand 3	A	744	745	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	720	722	first strand
Strand 2	A	757	759	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	946	948	first strand
Strand 2	A	973	979	parallel
Strand 3	A	961	970	anti-parallel
Strand 4	A	990	996	anti-parallel
Strand 5	A	1022	1025	parallel
Strand 6	A	1078	1086	anti-parallel
Strand 7	A	1089	1101	anti-parallel
Strand 8	A	1106	1110	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	946	948	first strand
Strand 2	A	973	979	parallel
Strand 3	A	961	970	anti-parallel
Strand 4	A	990	996	anti-parallel
Strand 5	A	1022	1025	parallel
Strand 6	A	1078	1086	anti-parallel
Strand 7	A	1089	1101	anti-parallel
Strand 8	A	1117	1120	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1009	1014	first strand
Strand 2	A	1042	1048	anti-parallel
Strand 3	A	1032	1037	anti-parallel
Strand 4	A	1060	1064	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1376	1379	first strand
Strand 2	A	1509	1513	anti-parallel
Strand 3	A	1500	1505	anti-parallel
Strand 4	A	1489	1493	anti-parallel
Strand 5	A	1477	1480	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1457	1462	first strand
Strand 2	A	1546	1550	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1636	1638	first strand
Strand 2	A	1651	1657	anti-parallel
Strand 3	A	1644	1645	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1636	1638	first strand
Strand 2	A	1651	1657	anti-parallel
Strand 3	A	1664	1668	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1692	1695	first strand
Strand 2	A	1698	1701	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1911	1913	first strand
Strand 2	A	1919	1922	anti-parallel
Strand 3	A	2000	2002	parallel
Strand 4	A	2076	2078	parallel
Strand 5	A	2102	2104	parallel
Strand 6	A	2120	2124	parallel
Strand 7	A	2160	2164	parallel
Strand 8	A	2170	2173	anti-parallel
Strand 9	A	2180	2183	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1990	1992	first strand
Strand 2	A	1937	1940	anti-parallel
Strand 3	A	1928	1932	anti-parallel
Strand 4	A	2064	2069	parallel
Strand 5	A	2090	2095	parallel
Strand 6	A	2110	2114	parallel
Strand 7	A	2147	2153	parallel
Strand 8	A	2139	2144	anti-parallel
Strand 9	A	2132	2135	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1977	1978	first strand
Strand 2	A	1944	1946	anti-parallel
Strand 3	A	2008	2017	parallel
Strand 4	A	2050	2062	anti-parallel
Strand 5	A	2045	2047	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1977	1978	first strand
Strand 2	A	1944	1946	anti-parallel
Strand 3	A	2008	2017	parallel
Strand 4	A	2050	2062	anti-parallel
Strand 5	A	2214	2217	parallel
Strand 6	A	2230	2233	anti-parallel
Strand 7	A	2240	2241	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1948	1949	first strand
Strand 2	A	1969	1970	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2253	2258	first strand
Strand 2	A	2261	2265	anti-parallel
Strand 3	A	2272	2275	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2285	2286	first strand
Strand 2	A	2381	2382	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2295	2303	first strand
Strand 2	A	2306	2314	anti-parallel
Strand 3	A	2319	2327	anti-parallel
Strand 4	A	2330	2336	anti-parallel
Strand 5	A	2385	2397	parallel
Strand 6	A	2400	2406	anti-parallel
Strand 7	A	2413	2414	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2445	2451	first strand
Strand 2	A	2457	2463	anti-parallel
Strand 3	A	2468	2473	anti-parallel
Strand 4	A	2488	2490	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2495	2501	first strand
Strand 2	A	2504	2509	anti-parallel
Strand 3	A	2513	2517	anti-parallel
Strand 4	A	2523	2528	anti-parallel
Strand 5	A	2552	2555	parallel
Strand 6	A	2569	2572	anti-parallel
Strand 7	A	2575	2578	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2589	2590	first strand
Strand 2	A	2599	2604	anti-parallel
Strand 3	A	2609	2614	anti-parallel
Strand 4	A	2641	2642	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2649	2655	first strand
Strand 2	A	2658	2663	anti-parallel
Strand 3	A	2667	2672	anti-parallel
Strand 4	A	2677	2682	anti-parallel
Strand 5	A	2710	2713	parallel
Strand 6	A	2719	2723	anti-parallel
Strand 7	A	2729	2733	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2742	2746	first strand
Strand 2	A	2753	2757	anti-parallel
Strand 3	A	2762	2766	anti-parallel
Strand 4	A	2771	2775	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2779	2783	first strand
Strand 2	A	2786	2790	anti-parallel
Strand 3	A	2807	2811	parallel
Strand 4	A	2831	2835	parallel
Strand 5	A	2875	2878	parallel
Strand 6	A	2865	2868	anti-parallel
Strand 7	A	2857	2860	anti-parallel
Strand 8	A	2923	2924	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2819	2821	first strand
Strand 2	A	2846	2852	parallel
Strand 3	A	2893	2897	parallel
Strand 4	A	2902	2904	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P52

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P52