Analysis of interatomic Contacts of Structural Units in PDB entry:
8P53

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P53 entry

There are 6 chains in PDB entry 8P53 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 7	PRO 274
B	MET 7	PRO 274
C	GLU 4	VAL 393
D	GLU 4	HIS 392
E	GLU 4	VAL 393
F	GLU 4	VAL 393

There are 98 helices in PDB entry 8P53. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	39	Right-handed alpha
Helix 2	AA2	A	53	59	Right-handed alpha
Helix 3	AA3	A	65	71	Right-handed alpha
Helix 4	AA4	A	76	80	Right-handed 310
Helix 5	AA5	A	84	86	Right-handed 310
Helix 6	AA6	A	103	114	Right-handed alpha
Helix 7	AA7	A	115	117	Right-handed 310
Helix 8	AA8	A	133	142	Right-handed alpha
Helix 9	AA9	A	153	172	Right-handed alpha
Helix 10	AB1	A	185	204	Right-handed alpha
Helix 11	AB2	A	217	227	Right-handed alpha
Helix 12	AB3	A	229	234	Right-handed alpha
Helix 13	AB4	A	237	252	Right-handed alpha
Helix 14	AB5	A	266	273	Right-handed alpha
Helix 15	AB6	B	23	39	Right-handed alpha
Helix 16	AB7	B	53	59	Right-handed alpha
Helix 17	AB8	B	65	71	Right-handed alpha
Helix 18	AB9	B	76	80	Right-handed 310
Helix 19	AC1	B	84	86	Right-handed 310
Helix 20	AC2	B	103	114	Right-handed alpha
Helix 21	AC3	B	115	117	Right-handed 310
Helix 22	AC4	B	133	142	Right-handed alpha
Helix 23	AC5	B	153	172	Right-handed alpha
Helix 24	AC6	B	185	204	Right-handed alpha
Helix 25	AC7	B	217	227	Right-handed alpha
Helix 26	AC8	B	229	234	Right-handed alpha
Helix 27	AC9	B	237	252	Right-handed alpha
Helix 28	AD1	B	266	273	Right-handed alpha
Helix 29	AD2	C	13	27	Right-handed alpha
Helix 30	AD3	C	38	46	Right-handed alpha
Helix 31	AD4	C	65	77	Right-handed alpha
Helix 32	AD5	C	94	98	Right-handed 310
Helix 33	AD6	C	110	129	Right-handed alpha
Helix 34	AD7	C	150	164	Right-handed alpha
Helix 35	AD8	C	179	190	Right-handed alpha
Helix 36	AD9	C	207	216	Right-handed alpha
Helix 37	AE1	C	232	237	Right-handed alpha
Helix 38	AE2	C	246	250	Right-handed 310
Helix 39	AE3	C	251	265	Right-handed alpha
Helix 40	AE4	C	289	296	Right-handed alpha
Helix 41	AE5	C	300	308	Right-handed alpha
Helix 42	AE6	C	316	322	Right-handed 310
Helix 43	AE7	C	323	339	Right-handed alpha
Helix 44	AE8	C	346	355	Right-handed alpha
Helix 45	AE9	C	360	376	Right-handed alpha
Helix 46	AF1	D	13	27	Right-handed alpha
Helix 47	AF2	D	38	46	Right-handed alpha
Helix 48	AF3	D	65	77	Right-handed alpha
Helix 49	AF4	D	94	98	Right-handed 310
Helix 50	AF5	D	110	129	Right-handed alpha
Helix 51	AF6	D	150	164	Right-handed alpha
Helix 52	AF7	D	179	190	Right-handed alpha
Helix 53	AF8	D	207	216	Right-handed alpha
Helix 54	AF9	D	232	237	Right-handed alpha
Helix 55	AG1	D	246	250	Right-handed 310
Helix 56	AG2	D	251	265	Right-handed alpha
Helix 57	AG3	D	289	296	Right-handed alpha
Helix 58	AG4	D	300	308	Right-handed alpha
Helix 59	AG5	D	316	322	Right-handed 310
Helix 60	AG6	D	323	339	Right-handed alpha
Helix 61	AG7	D	346	355	Right-handed alpha
Helix 62	AG8	D	360	376	Right-handed alpha
Helix 63	AG9	E	13	27	Right-handed alpha
Helix 64	AH1	E	38	44	Right-handed alpha
Helix 65	AH2	E	48	50	Right-handed 310
Helix 66	AH3	E	65	77	Right-handed alpha
Helix 67	AH4	E	110	132	Right-handed alpha
Helix 68	AH5	E	150	165	Right-handed alpha
Helix 69	AH6	E	179	190	Right-handed alpha
Helix 70	AH7	E	210	217	Right-handed alpha
Helix 71	AH8	E	232	237	Right-handed alpha
Helix 72	AH9	E	246	250	Right-handed 310
Helix 73	AI1	E	251	264	Right-handed alpha
Helix 74	AI2	E	289	296	Right-handed alpha
Helix 75	AI3	E	300	308	Right-handed alpha
Helix 76	AI4	E	316	322	Right-handed 310
Helix 77	AI5	E	323	338	Right-handed alpha
Helix 78	AI6	E	346	355	Right-handed alpha
Helix 79	AI7	E	360	376	Right-handed alpha
Helix 80	AI8	E	387	391	Right-handed 310
Helix 81	AI9	F	13	28	Right-handed alpha
Helix 82	AJ1	F	38	44	Right-handed alpha
Helix 83	AJ2	F	48	50	Right-handed 310
Helix 84	AJ3	F	65	77	Right-handed alpha
Helix 85	AJ4	F	110	132	Right-handed alpha
Helix 86	AJ5	F	150	165	Right-handed alpha
Helix 87	AJ6	F	179	190	Right-handed alpha
Helix 88	AJ7	F	210	217	Right-handed alpha
Helix 89	AJ8	F	232	237	Right-handed alpha
Helix 90	AJ9	F	247	250	Right-handed 310
Helix 91	AK1	F	251	265	Right-handed alpha
Helix 92	AK2	F	289	296	Right-handed alpha
Helix 93	AK3	F	300	308	Right-handed alpha
Helix 94	AK4	F	316	322	Right-handed 310
Helix 95	AK5	F	323	338	Right-handed alpha
Helix 96	AK6	F	346	355	Right-handed alpha
Helix 97	AK7	F	360	376	Right-handed alpha
Helix 98	AK8	F	387	391	Right-handed 310

There are 20 sheets in PDB entry 8P53. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	88	90	anti-parallel
Strand 3	A	42	46	parallel
Strand 4	A	123	127	parallel
Strand 5	A	12	16	parallel
Strand 6	A	145	150	parallel
Strand 7	A	175	183	parallel
Strand 8	A	207	215	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	88	90	anti-parallel
Strand 3	B	42	45	parallel
Strand 4	B	123	127	parallel
Strand 5	B	12	16	parallel
Strand 6	B	145	150	parallel
Strand 7	B	175	183	parallel
Strand 8	B	207	215	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	34	first strand
Strand 2	C	6	10	parallel
Strand 3	C	52	57	parallel
Strand 4	C	82	85	parallel
Strand 5	C	101	105	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	202	first strand
Strand 2	C	241	245	parallel
Strand 3	C	281	286	parallel
Strand 4	C	170	173	parallel
Strand 5	C	310	313	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	218	first strand
Strand 2	C	230	231	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	268	first strand
Strand 2	C	275	277	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	345	first strand
Strand 2	C	380	381	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	34	first strand
Strand 2	D	6	10	parallel
Strand 3	D	52	57	parallel
Strand 4	D	82	85	parallel
Strand 5	D	101	105	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	202	first strand
Strand 2	D	241	245	parallel
Strand 3	D	281	286	parallel
Strand 4	D	170	173	parallel
Strand 5	D	310	313	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	218	first strand
Strand 2	D	230	231	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	268	first strand
Strand 2	D	275	277	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	345	first strand
Strand 2	D	380	381	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	34	first strand
Strand 2	E	6	10	parallel
Strand 3	E	52	57	parallel
Strand 4	E	82	85	parallel
Strand 5	E	101	105	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	202	first strand
Strand 2	E	241	245	parallel
Strand 3	E	281	286	parallel
Strand 4	E	170	174	parallel
Strand 5	E	311	314	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	266	268	first strand
Strand 2	E	275	277	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	344	345	first strand
Strand 2	E	380	381	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	34	first strand
Strand 2	F	6	10	parallel
Strand 3	F	52	57	parallel
Strand 4	F	82	85	parallel
Strand 5	F	101	105	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	198	202	first strand
Strand 2	F	241	245	parallel
Strand 3	F	281	286	parallel
Strand 4	F	170	174	parallel
Strand 5	F	311	314	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	266	268	first strand
Strand 2	F	275	277	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	344	345	first strand
Strand 2	F	380	381	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P53

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P53