Analysis of interatomic Contacts of Structural Units in PDB entry:
8P5O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P5O entry

There are 4 chains in PDB entry 8P5O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 8	GLY 403
B	TYR 8	GLY 403
C	TYR 8	GLY 403
D	TYR 8	GLY 403

There are 56 helices in PDB entry 8P5O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	24	Right-handed alpha
Helix 2	AA2	A	39	56	Right-handed alpha
Helix 3	AA3	A	71	85	Right-handed alpha
Helix 4	AA4	A	96	104	Right-handed alpha
Helix 5	AA5	A	113	121	Right-handed alpha
Helix 6	AA6	A	133	137	Right-handed 310
Helix 7	AA7	A	171	185	Right-handed alpha
Helix 8	AA8	A	202	213	Right-handed alpha
Helix 9	AA9	A	222	227	Right-handed alpha
Helix 10	AB1	A	228	240	Right-handed alpha
Helix 11	AB2	A	248	255	Right-handed alpha
Helix 12	AB3	A	257	264	Right-handed alpha
Helix 13	AB4	A	281	292	Right-handed alpha
Helix 14	AB5	A	365	372	Right-handed alpha
Helix 15	AB6	B	12	24	Right-handed alpha
Helix 16	AB7	B	39	56	Right-handed alpha
Helix 17	AB8	B	71	85	Right-handed alpha
Helix 18	AB9	B	96	104	Right-handed alpha
Helix 19	AC1	B	113	121	Right-handed alpha
Helix 20	AC2	B	131	136	Right-handed alpha
Helix 21	AC3	B	171	184	Right-handed alpha
Helix 22	AC4	B	202	213	Right-handed alpha
Helix 23	AC5	B	222	228	Right-handed alpha
Helix 24	AC6	B	228	240	Right-handed alpha
Helix 25	AC7	B	248	255	Right-handed alpha
Helix 26	AC8	B	257	264	Right-handed alpha
Helix 27	AC9	B	281	292	Right-handed alpha
Helix 28	AD1	B	365	372	Right-handed alpha
Helix 29	AD2	C	12	24	Right-handed alpha
Helix 30	AD3	C	39	56	Right-handed alpha
Helix 31	AD4	C	71	85	Right-handed alpha
Helix 32	AD5	C	96	104	Right-handed alpha
Helix 33	AD6	C	113	121	Right-handed alpha
Helix 34	AD7	C	133	137	Right-handed 310
Helix 35	AD8	C	171	184	Right-handed alpha
Helix 36	AD9	C	202	213	Right-handed alpha
Helix 37	AE1	C	222	228	Right-handed alpha
Helix 38	AE2	C	228	240	Right-handed alpha
Helix 39	AE3	C	248	255	Right-handed alpha
Helix 40	AE4	C	257	264	Right-handed alpha
Helix 41	AE5	C	281	292	Right-handed alpha
Helix 42	AE6	C	365	372	Right-handed alpha
Helix 43	AE7	D	12	24	Right-handed alpha
Helix 44	AE8	D	39	56	Right-handed alpha
Helix 45	AE9	D	71	85	Right-handed alpha
Helix 46	AF1	D	96	104	Right-handed alpha
Helix 47	AF2	D	113	118	Right-handed alpha
Helix 48	AF3	D	133	137	Right-handed 310
Helix 49	AF4	D	171	184	Right-handed alpha
Helix 50	AF5	D	202	213	Right-handed alpha
Helix 51	AF6	D	222	228	Right-handed alpha
Helix 52	AF7	D	228	240	Right-handed alpha
Helix 53	AF8	D	248	255	Right-handed alpha
Helix 54	AF9	D	257	264	Right-handed alpha
Helix 55	AG1	D	281	292	Right-handed alpha
Helix 56	AG2	D	365	372	Right-handed alpha

There are 24 sheets in PDB entry 8P5O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	28	32	anti-parallel
Strand 3	A	217	219	parallel
Strand 4	A	192	194	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	90	first strand
Strand 2	A	63	67	parallel
Strand 3	A	109	112	parallel
Strand 4	A	126	128	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	156	first strand
Strand 2	A	166	170	anti-parallel
Strand 3	A	361	362	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	247	first strand
Strand 2	A	270	274	parallel
Strand 3	A	294	299	parallel
Strand 4	A	308	312	anti-parallel
Strand 5	A	326	327	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	336	first strand
Strand 2	A	349	355	anti-parallel
Strand 3	A	383	393	anti-parallel
Strand 4	A	373	375	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	336	first strand
Strand 2	A	349	355	anti-parallel
Strand 3	A	383	393	anti-parallel
Strand 4	A	399	401	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	28	32	anti-parallel
Strand 3	B	217	220	parallel
Strand 4	B	192	195	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	63	67	parallel
Strand 3	B	109	112	parallel
Strand 4	B	126	128	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	156	first strand
Strand 2	B	166	170	anti-parallel
Strand 3	B	361	362	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	247	first strand
Strand 2	B	270	274	parallel
Strand 3	B	294	299	parallel
Strand 4	B	308	312	anti-parallel
Strand 5	B	326	327	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	336	first strand
Strand 2	B	349	355	anti-parallel
Strand 3	B	383	393	anti-parallel
Strand 4	B	373	375	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	336	first strand
Strand 2	B	349	355	anti-parallel
Strand 3	B	383	393	anti-parallel
Strand 4	B	399	401	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	28	32	anti-parallel
Strand 3	C	217	219	parallel
Strand 4	C	192	194	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	90	first strand
Strand 2	C	63	67	parallel
Strand 3	C	109	112	parallel
Strand 4	C	126	128	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	156	first strand
Strand 2	C	166	170	anti-parallel
Strand 3	C	361	362	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	247	first strand
Strand 2	C	270	274	parallel
Strand 3	C	294	299	parallel
Strand 4	C	308	312	anti-parallel
Strand 5	C	326	327	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	336	first strand
Strand 2	C	349	355	anti-parallel
Strand 3	C	383	393	anti-parallel
Strand 4	C	373	375	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	336	first strand
Strand 2	C	349	355	anti-parallel
Strand 3	C	383	393	anti-parallel
Strand 4	C	399	401	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	28	32	anti-parallel
Strand 3	D	217	220	parallel
Strand 4	D	192	195	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	90	first strand
Strand 2	D	63	67	parallel
Strand 3	D	109	112	parallel
Strand 4	D	126	128	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	156	first strand
Strand 2	D	166	170	anti-parallel
Strand 3	D	361	362	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	247	first strand
Strand 2	D	270	274	parallel
Strand 3	D	294	299	parallel
Strand 4	D	308	312	anti-parallel
Strand 5	D	326	327	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	336	first strand
Strand 2	D	349	355	anti-parallel
Strand 3	D	383	393	anti-parallel
Strand 4	D	373	375	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	336	first strand
Strand 2	D	349	355	anti-parallel
Strand 3	D	383	393	anti-parallel
Strand 4	D	399	401	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P5O

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P5O