Analysis of interatomic Contacts of Structural Units in PDB entry:
8P5S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P5S entry

There is 1 chain in PDB entry 8P5S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 100GLU 1220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8P5S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
109 121Right-handed alpha
Helix 2
AA2
A
122 124Right-handed 310
Helix 3
AA3
A
135 151Right-handed alpha
Helix 4
AA4
A
158 174Right-handed alpha
Helix 5
AA5
A
175 179Right-handed 310
Helix 6
AA6
A
220 224Right-handed 310
Helix 7
AA7
A
225 242Right-handed alpha
Helix 8
AA8
A
246 251Right-handed 310
Helix 9
AA9
A
259 263Right-handed 310
Helix 10
AB1
A
288 292Right-handed 310
Helix 11
AB2
A
295 303Right-handed alpha
Helix 12
AB3
A
320 335Right-handed alpha
Helix 13
AB4
A
337 349Right-handed alpha
Helix 14
AB5
A
368 383Right-handed alpha
Helix 15
AB6
A
384 387Right-handed 310
Helix 16
AB7
A
404 413Right-handed 310
Helix 17
AB8
A
415 419Right-handed 310
Helix 18
AB9
A
427 431Right-handed 310
Helix 19
AC1
A
436 448Right-handed alpha
Helix 20
AC2
A
460 474Right-handed alpha
Helix 21
AC3
A
479 504Right-handed alpha
Helix 22
AC4
A
507 511Right-handed 310
Helix 23
AC5
A
517 532Right-handed alpha
Helix 24
AC6
A
545 553Right-handed alpha
Helix 25
AC7
A
557 562Right-handed alpha
Helix 26
AC8
A
612 629Right-handed alpha
Helix 27
AC9
A
645 651Right-handed alpha
Helix 28
AD1
A
652 659Right-handed alpha
Helix 29
AD2
A
685 689Right-handed 310
Helix 30
AD3
A
697 702Right-handed alpha
Helix 31
AD4
A
713 732Right-handed alpha
Helix 32
AD5
A
752 756Right-handed 310
Helix 33
AD6
A
759 765Right-handed alpha
Helix 34
AD7
A
769 781Right-handed alpha
Helix 35
AD8
A
785 805Right-handed alpha
Helix 36
AD9
A
836 845Right-handed alpha
Helix 37
AE1
A
846 848Right-handed 310
Helix 38
AE2
A
860 874Right-handed alpha
Helix 39
AE3
A
877 893Right-handed alpha
Helix 40
AE4
A
925 933Right-handed alpha
Helix 41
AE5
A
949 963Right-handed alpha
Helix 42
AE6
A
974 980Right-handed 310
Helix 43
AE7
A
981 988Right-handed alpha
Helix 44
AE8
A
991 997Right-handed alpha
Helix 45
AE9
A
1021 1028Right-handed alpha
Helix 46
AF1
A
1041 1055Right-handed alpha
Helix 47
AF2
A
1068 1072Right-handed 310
Helix 48
AF3
A
1079 1084Right-handed alpha
Helix 49
AF4
A
1099 1103Right-handed 310
Helix 50
AF5
A
1112 1125Right-handed alpha
Helix 51
AF6
A
1141 1151Right-handed alpha
Helix 52
AF7
A
1170 1182Right-handed alpha
Helix 53
AF8
A
1203 1220Right-handed alpha
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There are 7 sheets in PDB entry 8P5S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 134first strand
Strand 2
A
307 315anti-parallel
Strand 3
A
278 282anti-parallel
Strand 4
A
255 258parallel
Strand 5
A
198 204parallel
Strand 6
A
212 218anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 184first strand
Strand 2
A
187 191anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 424first strand
Strand 2
A
433 435anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 454first strand
Strand 2
A
706 710anti-parallel
Strand 3
A
735 740parallel
Strand 4
A
672 677parallel
Strand 5
A
637 644parallel
Strand 6
A
536 540parallel
Strand 7
A
598 603parallel
Strand 8
A
586 591anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
939 944first strand
Strand 2
A
895 900parallel
Strand 3
A
967 971parallel
Strand 4
A
1003 1007parallel
Strand 5
A
1061 1065parallel
Strand 6
A
1035 1037parallel
Strand 7
A
1136 1138anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
915 916first strand
Strand 2
A
923 924anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1091 1092first strand
Strand 2
A
1129 1134anti-parallel
Strand 3
A
1105 1109parallel
Strand 4
A
1157 1165parallel
Strand 5
A
1188 1193parallel
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