Analysis of interatomic Contacts of Structural Units in PDB entry:
8P65

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P65 entry

There are 22 chains in PDB entry 8P65 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 1	PHE 446
B	SER 1	LEU 439
C	MET 1	TRP 379
D	SER 1	LYS 241
E	SER 1	GLY 196
F	MET 1	LYS 111
G	MET 1	ARG 82
H	GLY 1	LYS 78
I	MET 1	SER 54
J	MET 1	GLU 64
K	MET 1	ASN 49
N	THR 1	PHE 446
O	SER 1	LEU 439
P	MET 1	TRP 379
Q	SER 1	LYS 241
R	SER 1	GLY 196
S	MET 1	LYS 111
T	MET 1	ARG 82
U	GLY 1	LYS 78
V	MET 1	SER 54
W	MET 1	GLU 64
X	MET 1	ASN 49

There are187 helices in PDB entry 8P65. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	10	Right-handed alpha
Helix 2	AA2	A	44	48	Right-handed 310
Helix 3	AA3	A	54	64	Right-handed alpha
Helix 4	AA4	A	73	83	Right-handed alpha
Helix 5	AA5	A	105	119	Right-handed alpha
Helix 6	AA6	A	123	142	Right-handed alpha
Helix 7	AA7	A	144	158	Right-handed alpha
Helix 8	AA8	A	161	165	Right-handed 310
Helix 9	AA9	A	170	177	Right-handed alpha
Helix 10	AB1	A	178	190	Right-handed alpha
Helix 11	AB2	A	204	216	Right-handed alpha
Helix 12	AB3	A	217	219	Right-handed 310
Helix 13	AB4	A	266	278	Right-handed alpha
Helix 14	AB5	A	286	290	Right-handed 310
Helix 15	AB6	A	292	301	Right-handed alpha
Helix 16	AB7	A	330	348	Right-handed alpha
Helix 17	AB8	A	350	369	Right-handed alpha
Helix 18	AB9	A	371	386	Right-handed alpha
Helix 19	AC1	A	391	401	Right-handed alpha
Helix 20	AC2	A	403	415	Right-handed alpha
Helix 21	AC3	A	433	439	Right-handed alpha
Helix 22	AC4	A	440	442	Right-handed 310
Helix 23	AC5	B	54	58	Right-handed 310
Helix 24	AC6	B	64	72	Right-handed alpha
Helix 25	AC7	B	81	92	Right-handed alpha
Helix 26	AC8	B	115	129	Right-handed alpha
Helix 27	AC9	B	133	141	Right-handed alpha
Helix 28	AD1	B	142	152	Right-handed alpha
Helix 29	AD2	B	155	168	Right-handed alpha
Helix 30	AD3	B	170	174	Right-handed 310
Helix 31	AD4	B	187	199	Right-handed alpha
Helix 32	AD5	B	200	202	Right-handed 310
Helix 33	AD6	B	212	218	Right-handed alpha
Helix 34	AD7	B	266	279	Right-handed alpha
Helix 35	AD8	B	293	301	Right-handed alpha
Helix 36	AD9	B	332	349	Right-handed alpha
Helix 37	AE1	B	353	374	Right-handed alpha
Helix 38	AE2	B	374	389	Right-handed alpha
Helix 39	AE3	B	394	404	Right-handed alpha
Helix 40	AE4	B	406	420	Right-handed alpha
Helix 41	AE5	C	12	19	Right-handed 310
Helix 42	AE6	C	28	30	Right-handed 310
Helix 43	AE7	C	31	52	Right-handed alpha
Helix 44	AE8	C	58	61	Right-handed 310
Helix 45	AE9	C	62	72	Right-handed alpha
Helix 46	AF1	C	75	104	Right-handed alpha
Helix 47	AF2	C	105	108	Right-handed 310
Helix 48	AF3	C	109	133	Right-handed alpha
Helix 49	AF4	C	138	149	Right-handed alpha
Helix 50	AF5	C	150	153	Right-handed 310
Helix 51	AF6	C	156	166	Right-handed alpha
Helix 52	AF7	C	171	199	Right-handed alpha
Helix 53	AF8	C	213	215	Right-handed 310
Helix 54	AF9	C	220	246	Right-handed alpha
Helix 55	AG1	C	252	257	Right-handed 310
Helix 56	AG2	C	271	273	Right-handed 310
Helix 57	AG3	C	274	283	Right-handed alpha
Helix 58	AG4	C	286	300	Right-handed alpha
Helix 59	AG5	C	301	308	Right-handed 310
Helix 60	AG6	C	314	317	Right-handed 310
Helix 61	AG7	C	318	340	Right-handed alpha
Helix 62	AG8	C	344	364	Right-handed alpha
Helix 63	AG9	C	364	377	Right-handed alpha
Helix 64	AH1	D	22	36	Right-handed alpha
Helix 65	AH2	D	37	40	Right-handed 310
Helix 66	AH3	D	57	67	Right-handed alpha
Helix 67	AH4	D	97	105	Right-handed alpha
Helix 68	AH5	D	123	133	Right-handed alpha
Helix 69	AH6	D	178	195	Right-handed alpha
Helix 70	AH7	D	197	232	Right-handed alpha
Helix 71	AH8	E	1	5	Right-handed 310
Helix 72	AH9	E	15	19	Right-handed 310
Helix 73	AI1	E	28	62	Right-handed alpha
Helix 74	AI2	E	68	73	Right-handed 310
Helix 75	AI3	E	102	112	Right-handed alpha
Helix 76	AI4	E	113	117	Right-handed 310
Helix 77	AI5	F	14	26	Right-handed alpha
Helix 78	AI6	F	33	37	Right-handed 310
Helix 79	AI7	F	43	50	Right-handed alpha
Helix 80	AI8	F	52	72	Right-handed alpha
Helix 81	AI9	F	77	81	Right-handed 310
Helix 82	AJ1	F	91	109	Right-handed alpha
Helix 83	AJ2	G	21	24	Right-handed 310
Helix 84	AJ3	G	29	72	Right-handed alpha
Helix 85	AJ4	H	15	22	Right-handed alpha
Helix 86	AJ5	H	23	26	Right-handed 310
Helix 87	AJ6	H	27	47	Right-handed alpha
Helix 88	AJ7	H	54	72	Right-handed alpha
Helix 89	AJ8	H	73	77	Right-handed 310
Helix 90	AJ9	J	5	14	Right-handed alpha
Helix 91	AK1	J	17	48	Right-handed alpha
Helix 92	AK2	J	52	57	Right-handed alpha
Helix 93	AK3	J	58	60	Right-handed 310
Helix 94	AK4	K	7	17	Right-handed alpha
Helix 95	AK5	K	17	36	Right-handed alpha
Helix 96	AK6	K	38	43	Right-handed alpha
Helix 97	AK7	N	3	10	Right-handed alpha
Helix 98	AK8	N	44	48	Right-handed 310
Helix 99	AK9	N	54	64	Right-handed alpha
Helix 100	AL1	N	73	83	Right-handed alpha
Helix 101	AL2	N	105	119	Right-handed alpha
Helix 102	AL3	N	123	142	Right-handed alpha
Helix 103	AL4	N	144	158	Right-handed alpha
Helix 104	AL5	N	161	165	Right-handed 310
Helix 105	AL6	N	170	177	Right-handed alpha
Helix 106	AL7	N	178	190	Right-handed alpha
Helix 107	AL8	N	191	193	Right-handed 310
Helix 108	AL9	N	204	216	Right-handed alpha
Helix 109	AM1	N	217	219	Right-handed 310
Helix 110	AM2	N	265	278	Right-handed alpha
Helix 111	AM3	N	286	290	Right-handed 310
Helix 112	AM4	N	292	301	Right-handed alpha
Helix 113	AM5	N	330	348	Right-handed alpha
Helix 114	AM6	N	350	369	Right-handed alpha
Helix 115	AM7	N	372	386	Right-handed alpha
Helix 116	AM8	N	391	401	Right-handed alpha
Helix 117	AM9	N	403	415	Right-handed alpha
Helix 118	AN1	N	433	439	Right-handed alpha
Helix 119	AN2	N	440	442	Right-handed 310
Helix 120	AN3	O	54	58	Right-handed 310
Helix 121	AN4	O	64	72	Right-handed alpha
Helix 122	AN5	O	81	92	Right-handed alpha
Helix 123	AN6	O	115	129	Right-handed alpha
Helix 124	AN7	O	133	140	Right-handed alpha
Helix 125	AN8	O	140	152	Right-handed alpha
Helix 126	AN9	O	154	168	Right-handed alpha
Helix 127	AO1	O	170	174	Right-handed 310
Helix 128	AO2	O	187	199	Right-handed alpha
Helix 129	AO3	O	200	202	Right-handed 310
Helix 130	AO4	O	212	220	Right-handed alpha
Helix 131	AO5	O	266	279	Right-handed alpha
Helix 132	AO6	O	293	301	Right-handed alpha
Helix 133	AO7	O	332	349	Right-handed alpha
Helix 134	AO8	O	353	372	Right-handed alpha
Helix 135	AO9	O	374	389	Right-handed alpha
Helix 136	AP1	O	394	404	Right-handed alpha
Helix 137	AP2	O	406	420	Right-handed alpha
Helix 138	AP3	P	11	20	Right-handed alpha
Helix 139	AP4	P	28	31	Right-handed 310
Helix 140	AP5	P	32	52	Right-handed alpha
Helix 141	AP6	P	58	61	Right-handed 310
Helix 142	AP7	P	62	72	Right-handed alpha
Helix 143	AP8	P	75	104	Right-handed alpha
Helix 144	AP9	P	105	108	Right-handed 310
Helix 145	AQ1	P	109	132	Right-handed alpha
Helix 146	AQ2	P	138	148	Right-handed alpha
Helix 147	AQ3	P	149	153	Right-handed 310
Helix 148	AQ4	P	156	166	Right-handed alpha
Helix 149	AQ5	P	171	202	Right-handed alpha
Helix 150	AQ6	P	213	215	Right-handed 310
Helix 151	AQ7	P	224	246	Right-handed alpha
Helix 152	AQ8	P	252	257	Right-handed 310
Helix 153	AQ9	P	274	284	Right-handed alpha
Helix 154	AR1	P	286	300	Right-handed alpha
Helix 155	AR2	P	301	308	Right-handed 310
Helix 156	AR3	P	314	317	Right-handed 310
Helix 157	AR4	P	318	340	Right-handed alpha
Helix 158	AR5	P	344	364	Right-handed alpha
Helix 159	AR6	P	364	377	Right-handed alpha
Helix 160	AR7	Q	22	36	Right-handed alpha
Helix 161	AR8	Q	37	40	Right-handed 310
Helix 162	AR9	Q	57	67	Right-handed alpha
Helix 163	AS1	Q	97	105	Right-handed alpha
Helix 164	AS2	Q	123	133	Right-handed alpha
Helix 165	AS3	Q	178	195	Right-handed alpha
Helix 166	AS4	Q	197	232	Right-handed alpha
Helix 167	AS5	R	1	5	Right-handed 310
Helix 168	AS6	R	16	20	Right-handed 310
Helix 169	AS7	R	28	62	Right-handed alpha
Helix 170	AS8	R	66	71	Right-handed alpha
Helix 171	AS9	R	102	112	Right-handed alpha
Helix 172	AT1	S	14	26	Right-handed alpha
Helix 173	AT2	S	33	37	Right-handed 310
Helix 174	AT3	S	43	50	Right-handed alpha
Helix 175	AT4	S	52	72	Right-handed alpha
Helix 176	AT5	S	77	81	Right-handed 310
Helix 177	AT6	S	91	110	Right-handed alpha
Helix 178	AT7	T	21	24	Right-handed 310
Helix 179	AT8	T	29	72	Right-handed alpha
Helix 180	AT9	U	15	23	Right-handed alpha
Helix 181	AU1	U	27	46	Right-handed alpha
Helix 182	AU2	U	55	72	Right-handed alpha
Helix 183	AU3	V	29	34	Right-handed alpha
Helix 184	AU4	W	5	14	Right-handed alpha
Helix 185	AU5	W	17	48	Right-handed alpha
Helix 186	AU6	W	56	60	Right-handed 310
Helix 187	AU7	X	8	37	Right-handed alpha

There are 19 sheets in PDB entry 8P65. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	18	first strand
Strand 2	A	24	29	anti-parallel
Strand 3	A	195	201	parallel
Strand 4	A	34	42	anti-parallel
Strand 5	A	94	102	anti-parallel
Strand 6	A	85	90	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	313	first strand
Strand 2	A	318	326	anti-parallel
Strand 3	A	251	258	anti-parallel
Strand 4	A	421	426	anti-parallel
Strand 5	A	239	244	parallel
Strand 6	G	14	19	anti-parallel
Strand 7	D	233	237	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	28	first strand
Strand 2	B	34	37	anti-parallel
Strand 3	B	204	209	parallel
Strand 4	B	44	51	anti-parallel
Strand 5	B	105	112	anti-parallel
Strand 6	B	95	100	anti-parallel
Strand 7	V	14	16	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	245	first strand
Strand 2	B	423	427	parallel
Strand 3	B	252	261	anti-parallel
Strand 4	B	320	329	anti-parallel
Strand 5	B	307	315	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	24	first strand
Strand 2	C	217	219	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	71	first strand
Strand 2	D	82	84	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	149	first strand
Strand 2	D	157	158	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	77	first strand
Strand 2	E	192	195	anti-parallel
Strand 3	E	185	187	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	91	first strand
Strand 2	E	94	100	anti-parallel
Strand 3	E	132	136	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	156	157	first strand
Strand 2	E	164	165	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	14	16	first strand
Strand 2	O	95	100	anti-parallel
Strand 3	O	105	112	anti-parallel
Strand 4	O	44	51	anti-parallel
Strand 5	O	204	209	anti-parallel
Strand 6	O	34	38	parallel
Strand 7	O	24	28	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	15	18	first strand
Strand 2	N	24	29	anti-parallel
Strand 3	N	195	201	parallel
Strand 4	N	34	41	anti-parallel
Strand 5	N	95	102	anti-parallel
Strand 6	N	85	90	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	304	313	first strand
Strand 2	N	318	326	anti-parallel
Strand 3	N	251	258	anti-parallel
Strand 4	N	421	426	anti-parallel
Strand 5	N	239	244	parallel
Strand 6	T	14	19	anti-parallel
Strand 7	Q	233	237	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	243	245	first strand
Strand 2	O	423	427	parallel
Strand 3	O	252	260	anti-parallel
Strand 4	O	320	329	anti-parallel
Strand 5	O	307	315	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	22	24	first strand
Strand 2	P	217	219	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	69	71	first strand
Strand 2	Q	82	84	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	75	77	first strand
Strand 2	R	192	194	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	88	91	first strand
Strand 2	R	94	100	anti-parallel
Strand 3	R	132	136	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	156	157	first strand
Strand 2	R	164	165	anti-parallel
Strand 3	R	171	173	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P65

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P65