Analysis of interatomic Contacts of Structural Units in PDB entry:
8P6F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P6F entry

There are 2 chains in PDB entry 8P6F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2LYS 517
B
 ASP 2LYS 517
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8P6F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 15Right-handed 310
Helix 2
AA2
A
16 26Right-handed alpha
Helix 3
AA3
A
35 46Right-handed alpha
Helix 4
AA4
A
61 73Right-handed alpha
Helix 5
AA5
A
86 96Right-handed alpha
Helix 6
AA6
A
107 120Right-handed alpha
Helix 7
AA7
A
120 135Right-handed alpha
Helix 8
AA8
A
136 147Right-handed alpha
Helix 9
AA9
A
149 168Right-handed alpha
Helix 10
AB1
A
172 198Right-handed alpha
Helix 11
AB2
A
199 203Right-handed 310
Helix 12
AB3
A
214 220Right-handed alpha
Helix 13
AB4
A
220 227Right-handed alpha
Helix 14
AB5
A
240 252Right-handed alpha
Helix 15
AB6
A
270 281Right-handed alpha
Helix 16
AB7
A
283 291Right-handed alpha
Helix 17
AB8
A
307 319Right-handed alpha
Helix 18
AB9
A
332 342Right-handed alpha
Helix 19
AC1
A
343 347Right-handed 310
Helix 20
AC2
A
357 369Right-handed alpha
Helix 21
AC3
A
369 376Right-handed alpha
Helix 22
AC4
A
378 392Right-handed alpha
Helix 23
AC5
A
393 405Right-handed alpha
Helix 24
AC6
A
447 449Right-handed 310
Helix 25
AC7
A
456 461Right-handed 310
Helix 26
AC8
A
485 494Right-handed alpha
Helix 27
AC9
A
503 507Right-handed alpha
Helix 28
AD1
B
12 15Right-handed 310
Helix 29
AD2
B
16 26Right-handed alpha
Helix 30
AD3
B
35 46Right-handed alpha
Helix 31
AD4
B
61 73Right-handed alpha
Helix 32
AD5
B
86 96Right-handed alpha
Helix 33
AD6
B
107 120Right-handed alpha
Helix 34
AD7
B
120 135Right-handed alpha
Helix 35
AD8
B
136 147Right-handed alpha
Helix 36
AD9
B
149 168Right-handed alpha
Helix 37
AE1
B
172 196Right-handed alpha
Helix 38
AE2
B
198 203Right-handed 310
Helix 39
AE3
B
214 220Right-handed alpha
Helix 40
AE4
B
220 227Right-handed alpha
Helix 41
AE5
B
240 252Right-handed alpha
Helix 42
AE6
B
270 281Right-handed alpha
Helix 43
AE7
B
283 291Right-handed alpha
Helix 44
AE8
B
307 319Right-handed alpha
Helix 45
AE9
B
332 342Right-handed alpha
Helix 46
AF1
B
343 347Right-handed 310
Helix 47
AF2
B
357 369Right-handed alpha
Helix 48
AF3
B
369 376Right-handed alpha
Helix 49
AF4
B
378 392Right-handed alpha
Helix 50
AF5
B
393 405Right-handed alpha
Helix 51
AF6
B
456 461Right-handed 310
Helix 52
AF7
B
485 494Right-handed alpha
Helix 53
AF8
B
503 507Right-handed alpha
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There are 12 sheets in PDB entry 8P6F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 33first strand
Strand 2
A
4 9parallel
Strand 3
A
50 53parallel
Strand 4
A
78 82parallel
Strand 5
A
100 103parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 260first strand
Strand 2
A
511 516anti-parallel
Strand 3
A
408 412anti-parallel
Strand 4
A
231 236parallel
Strand 5
A
351 356parallel
Strand 6
A
325 330parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
508 509anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 420first strand
Strand 2
A
496 498anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 426first strand
Strand 2
A
478 482parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 441first strand
Strand 2
A
470 474anti-parallel
Strand 3
A
451 454anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 33first strand
Strand 2
B
4 9parallel
Strand 3
B
50 53parallel
Strand 4
B
78 82parallel
Strand 5
B
100 103parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 260first strand
Strand 2
B
511 516anti-parallel
Strand 3
B
408 412anti-parallel
Strand 4
B
231 236parallel
Strand 5
B
351 356parallel
Strand 6
B
325 330parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 264first strand
Strand 2
B
508 509anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
418 419first strand
Strand 2
B
497 498anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
445 446first strand
Strand 2
B
422 427anti-parallel
Strand 3
B
478 482parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
438 442first strand
Strand 2
B
469 474anti-parallel
Strand 3
B
451 454anti-parallel
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