Analysis of interatomic Contacts of Structural Units in PDB entry:
8P6G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P6G entry

There are 4 chains in PDB entry 8P6G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 5LEU 68
B
 MET 72ILE 306
D
 SER 6LEU 68
D
 MET 72GLY 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8P6G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
9 13Right-handed 310
Helix 2
AA2
B
41 43Right-handed 310
Helix 3
AA3
B
60 65Right-handed 310
Helix 4
AA4
B
72 76Right-handed 310
Helix 5
AA5
B
79 85Right-handed 310
Helix 6
AA6
B
86 91Right-handed alpha
Helix 7
AA7
B
209 218Right-handed alpha
Helix 8
AA8
D
8 13Right-handed 310
Helix 9
AA9
D
60 65Right-handed 310
Helix 10
AB1
D
72 76Right-handed 310
Helix 11
AB2
D
79 85Right-handed 310
Helix 12
AB3
D
86 91Right-handed alpha
Helix 13
AB4
D
208 218Right-handed alpha
Helix 14
AB5
D
233 236Right-handed 310
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There are 2 sheets in PDB entry 8P6G. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 26first strand
Strand 2
B
29 40anti-parallel
Strand 3
B
45 52anti-parallel
Strand 4
B
294 304anti-parallel
Strand 5
B
276 285anti-parallel
Strand 6
B
225 232anti-parallel
Strand 7
B
237 247anti-parallel
Strand 8
B
253 264anti-parallel
Strand 9
B
96 104anti-parallel
Strand 10
B
109 119anti-parallel
Strand 11
B
122 132anti-parallel
Strand 12
B
16 26parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 26first strand
Strand 2
D
29 40anti-parallel
Strand 3
D
45 52anti-parallel
Strand 4
D
294 304anti-parallel
Strand 5
D
276 285anti-parallel
Strand 6
D
225 232anti-parallel
Strand 7
D
237 247anti-parallel
Strand 8
D
253 264anti-parallel
Strand 9
D
96 104anti-parallel
Strand 10
D
109 119anti-parallel
Strand 11
D
122 132anti-parallel
Strand 12
D
16 26parallel
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