Analysis of interatomic Contacts of Structural Units in PDB entry:
8P6P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P6P entry

There are 4 chains in PDB entry 8P6P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
3	G 1913	G 1936
5	U 5	C 524
5	C 526	C 1374
5	G 1376	G 1376

There are 94 helices in PDB entry 8P6P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	27	Right-handed alpha
Helix 2	AA2	A	38	42	Right-handed 310
Helix 3	AA3	A	57	78	Right-handed alpha
Helix 4	AA4	A	89	103	Right-handed alpha
Helix 5	AA5	A	119	140	Right-handed alpha
Helix 6	AA6	A	141	145	Right-handed 310
Helix 7	AA7	A	146	164	Right-handed alpha
Helix 8	AA8	A	184	194	Right-handed alpha
Helix 9	AA9	A	223	240	Right-handed alpha
Helix 10	AB1	A	250	255	Right-handed alpha
Helix 11	AB2	B	6	12	Right-handed alpha
Helix 12	AB3	B	26	47	Right-handed alpha
Helix 13	AB4	B	48	51	Right-handed 310
Helix 14	AB5	B	74	79	Right-handed alpha
Helix 15	AB6	B	83	97	Right-handed alpha
Helix 16	AB7	B	111	114	Right-handed 310
Helix 17	AB8	B	115	129	Right-handed alpha
Helix 18	AB9	B	132	147	Right-handed alpha
Helix 19	AC1	B	160	163	Right-handed 310
Helix 20	AC2	C	6	15	Right-handed alpha
Helix 21	AC3	C	21	26	Right-handed alpha
Helix 22	AC4	C	48	64	Right-handed alpha
Helix 23	AC5	C	67	80	Right-handed alpha
Helix 24	AC6	C	88	95	Right-handed alpha
Helix 25	AC7	C	96	105	Right-handed alpha
Helix 26	AC8	C	109	120	Right-handed alpha
Helix 27	AC9	C	154	159	Right-handed alpha
Helix 28	AD1	C	194	204	Right-handed alpha
Helix 29	AD2	D	110	125	Right-handed alpha
Helix 30	AD3	D	164	174	Right-handed alpha
Helix 31	AD4	D	187	201	Right-handed alpha
Helix 32	AD5	D	206	213	Right-handed alpha
Helix 33	AD6	E	13	28	Right-handed alpha
Helix 34	AD7	E	65	68	Right-handed 310
Helix 35	AD8	E	69	77	Right-handed alpha
Helix 36	AD9	E	89	93	Right-handed 310
Helix 37	AE1	E	96	101	Right-handed alpha
Helix 38	AE2	E	101	123	Right-handed alpha
Helix 39	AE3	E	142	149	Right-handed alpha
Helix 40	AE4	F	19	30	Right-handed alpha
Helix 41	AE5	F	34	54	Right-handed alpha
Helix 42	AE6	F	56	69	Right-handed alpha
Helix 43	AE7	F	91	108	Right-handed alpha
Helix 44	AE8	F	114	127	Right-handed alpha
Helix 45	AE9	F	131	147	Right-handed alpha
Helix 46	AF1	F	148	152	Right-handed 310
Helix 47	AF2	G	13	28	Right-handed alpha
Helix 48	AF3	G	38	52	Right-handed alpha
Helix 49	AF4	G	100	104	Right-handed 310
Helix 50	AF5	G	106	111	Right-handed 310
Helix 51	AF6	G	125	132	Right-handed alpha
Helix 52	AF7	H	36	41	Right-handed alpha
Helix 53	AF8	H	45	56	Right-handed alpha
Helix 54	AF9	H	74	90	Right-handed alpha
Helix 55	AG1	H	91	92	Right-handed 310
Helix 56	AG2	H	93	94	Right-handed 310
Helix 57	AG3	H	95	104	Right-handed alpha
Helix 58	AG4	I	21	38	Right-handed alpha
Helix 59	AG5	I	85	94	Right-handed alpha
Helix 60	AG6	J	40	44	Right-handed alpha
Helix 61	AG7	J	46	51	Right-handed 310
Helix 62	AG8	J	52	71	Right-handed alpha
Helix 63	AG9	J	87	97	Right-handed alpha
Helix 64	AH1	K	3	10	Right-handed alpha
Helix 65	AH2	K	21	24	Right-handed 310
Helix 66	AH3	K	126	131	Right-handed alpha
Helix 67	AH4	L	14	19	Right-handed alpha
Helix 68	AH5	L	27	38	Right-handed alpha
Helix 69	AH6	L	49	63	Right-handed alpha
Helix 70	AH7	L	65	82	Right-handed alpha
Helix 71	AH8	L	85	93	Right-handed alpha
Helix 72	AH9	M	3	12	Right-handed alpha
Helix 73	AI1	M	16	20	Right-handed 310
Helix 74	AI2	M	41	51	Right-handed alpha
Helix 75	AI3	N	4	13	Right-handed alpha
Helix 76	AI4	N	21	44	Right-handed alpha
Helix 77	AI5	N	46	70	Right-handed alpha
Helix 78	AI6	N	71	83	Right-handed alpha
Helix 79	AI7	O	53	62	Right-handed alpha
Helix 80	AI8	O	66	77	Right-handed alpha
Helix 81	AI9	O	77	87	Right-handed alpha
Helix 82	AJ1	Q	41	47	Right-handed alpha
Helix 83	AJ2	Q	56	64	Right-handed alpha
Helix 84	AJ3	Q	72	77	Right-handed alpha
Helix 85	AJ4	Q	79	96	Right-handed alpha
Helix 86	AJ5	R	13	25	Right-handed alpha
Helix 87	AJ6	R	41	45	Right-handed 310
Helix 88	AJ7	R	70	75	Right-handed 310
Helix 89	AJ8	S	4	38	Right-handed alpha
Helix 90	AJ9	S	40	58	Right-handed alpha
Helix 91	AK1	S	61	80	Right-handed alpha
Helix 92	AK2	T	11	32	Right-handed alpha
Helix 93	AK3	T	37	60	Right-handed alpha
Helix 94	AK4	x	59	75	Right-handed alpha

There are 19 sheets in PDB entry 8P6P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	108	first strand
Strand 2	A	82	85	parallel
Strand 3	A	175	178	parallel
Strand 4	A	198	200	parallel
Strand 5	A	213	214	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	53	61	parallel
Strand 3	B	64	71	anti-parallel
Strand 4	B	102	108	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	173	first strand
Strand 2	B	152	158	anti-parallel
Strand 3	B	197	209	anti-parallel
Strand 4	B	183	194	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	79	first strand
Strand 2	D	84	95	anti-parallel
Strand 3	D	100	108	anti-parallel
Strand 4	D	127	128	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	144	first strand
Strand 2	D	147	153	anti-parallel
Strand 3	D	178	182	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	43	first strand
Strand 2	E	55	60	anti-parallel
Strand 3	E	5	10	anti-parallel
Strand 4	E	82	87	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	163	first strand
Strand 2	G	54	62	anti-parallel
Strand 3	G	68	74	anti-parallel
Strand 4	G	32	36	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	77	first strand
Strand 2	F	84	89	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	86	89	first strand
Strand 2	G	136	142	anti-parallel
Strand 3	G	113	117	anti-parallel
Strand 4	G	122	124	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	11	first strand
Strand 2	H	16	22	anti-parallel
Strand 3	H	64	70	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	46	58	first strand
Strand 2	I	68	84	anti-parallel
Strand 3	I	10	18	anti-parallel
Strand 4	I	103	104	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	46	58	first strand
Strand 2	I	68	84	anti-parallel
Strand 3	M	57	58	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	39	first strand
Strand 2	J	23	28	anti-parallel
Strand 3	J	11	18	anti-parallel
Strand 4	J	74	81	parallel
Strand 5	J	99	102	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	26	28	first strand
Strand 2	K	35	37	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	43	53	first strand
Strand 2	K	63	70	anti-parallel
Strand 3	K	75	79	anti-parallel
Strand 4	K	108	110	parallel
Strand 5	K	92	97	anti-parallel
Strand 6	K	43	53	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	33	34	first strand
Strand 2	M	39	40	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	2	5	first strand
Strand 2	O	17	23	anti-parallel
Strand 3	O	34	39	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	8	15	first strand
Strand 2	P	21	28	anti-parallel
Strand 3	P	41	48	anti-parallel
Strand 4	P	73	80	parallel
Strand 5	P	60	70	anti-parallel
Strand 6	P	8	15	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	31	33	first strand
Strand 2	R	48	52	parallel
Strand 3	R	57	61	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P6P

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P6P