Analysis of interatomic Contacts of Structural Units in PDB entry:
8P6S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P6S entry

There is 1 chain in PDB entry 8P6S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 7ASN 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8P6S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 37Right-handed alpha
Helix 2
AA2
A
50 58Right-handed alpha
Helix 3
AA3
A
66 80Right-handed alpha
Helix 4
AA4
A
109 114Right-handed 310
Helix 5
AA5
A
115 119Right-handed 310
Helix 6
AA6
A
126 131Right-handed alpha
Helix 7
AA7
A
139 143Right-handed alpha
Helix 8
AA8
A
153 159Right-handed alpha
Helix 9
AA9
A
171 183Right-handed alpha
Helix 10
AB1
A
208 225Right-handed alpha
Helix 11
AB2
A
240 243Right-handed 310
Helix 12
AB3
A
244 256Right-handed alpha
Helix 13
AB4
A
257 260Right-handed 310
Helix 14
AB5
A
272 281Right-handed alpha
Helix 15
AB6
A
297 301Right-handed 310
Helix 16
AB7
A
316 325Right-handed alpha
Helix 17
AB8
A
334 343Right-handed 310
Helix 18
AB9
A
351 365Right-handed alpha
Helix 19
AC1
A
371 379Right-handed alpha
Helix 20
AC2
A
379 391Right-handed alpha
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There are 2 sheets in PDB entry 8P6S. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
89 98anti-parallel
Strand 3
A
41 48parallel
Strand 4
A
8 12parallel
Strand 5
A
121 125parallel
Strand 6
A
145 150parallel
Strand 7
A
185 188parallel
Strand 8
A
199 201parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 290first strand
Strand 2
A
263 267parallel
Strand 3
A
230 236parallel
Strand 4
A
303 308parallel
Strand 5
A
328 332parallel
Strand 6
A
346 349parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il