Analysis of interatomic Contacts of Structural Units in PDB entry:
8P72


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P72 entry

There are 3 chains in PDB entry 8P72 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 ALA 244PRO 308
I
 MET 1GLU 284
J
 LYS 10PRO 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8P72. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
263 267Right-handed 310
Helix 2
AA2
H
270 275Right-handed 310
Helix 3
AA3
H
279 286Right-handed alpha
Helix 4
AA4
H
288 302Right-handed alpha
Helix 5
AA5
I
1 4Right-handed 310
Helix 6
AA6
I
5 11Right-handed alpha
Helix 7
AA7
I
15 38Right-handed alpha
Helix 8
AA8
I
49 70Right-handed alpha
Helix 9
AA9
I
76 93Right-handed alpha
Helix 10
AB1
I
100 116Right-handed alpha
Helix 11
AB2
I
121 129Right-handed alpha
Helix 12
AB3
I
132 154Right-handed alpha
Helix 13
AB4
I
163 178Right-handed alpha
Helix 14
AB5
I
183 186Right-handed 310
Helix 15
AB6
I
187 201Right-handed alpha
Helix 16
AB7
I
202 206Right-handed 310
Helix 17
AB8
I
208 224Right-handed alpha
Helix 18
AB9
I
228 234Right-handed alpha
Helix 19
AC1
I
241 262Right-handed alpha
Helix 20
AC2
I
266 283Right-handed alpha
Helix 21
AC3
J
56 68Right-handed alpha
Helix 22
AC4
J
98 104Right-handed alpha
Helix 23
AC5
J
110 131Right-handed alpha
Helix 24
AC6
J
175 179Right-handed 310
Helix 25
AC7
J
180 185Right-handed alpha
Helix 26
AC8
J
192 209Right-handed alpha
Helix 27
AC9
J
217 230Right-handed alpha
Helix 28
AD1
J
239 243Right-handed 310
Helix 29
AD2
J
256 261Right-handed alpha
Helix 30
AD3
J
265 276Right-handed alpha
Helix 31
AD4
J
285 292Right-handed alpha
Helix 32
AD5
J
292 297Right-handed alpha
Helix 33
AD6
J
303 307Right-handed 310
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There are 4 sheets in PDB entry 8P72. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
13 14first strand
Strand 2
J
25 30anti-parallel
Strand 3
J
19 20anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
13 14first strand
Strand 2
J
25 30anti-parallel
Strand 3
J
38 41anti-parallel
Strand 4
J
86 92anti-parallel
Strand 5
J
77 83anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
96 97first strand
Strand 2
J
143 145anti-parallel
Strand 3
J
151 153anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
133 134first strand
Strand 2
J
160 161anti-parallel
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