Analysis of interatomic Contacts of Structural Units in PDB entry:
8P7A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P7A entry

There are 2 chains in PDB entry 8P7A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 426	THR 774
B	LEU 430	THR 774

There are 18 helices in PDB entry 8P7A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	434	439	Right-handed alpha
Helix 2	AA2	A	440	444	Right-handed 310
Helix 3	AA3	A	445	455	Right-handed alpha
Helix 4	AA4	A	457	471	Right-handed alpha
Helix 5	AA5	A	660	666	Right-handed alpha
Helix 6	AA6	A	674	678	Right-handed 310
Helix 7	AA7	A	682	687	Right-handed alpha
Helix 8	AA8	A	687	696	Right-handed alpha
Helix 9	AA9	A	698	724	Right-handed alpha
Helix 10	AB1	B	434	439	Right-handed alpha
Helix 11	AB2	B	440	444	Right-handed 310
Helix 12	AB3	B	446	455	Right-handed alpha
Helix 13	AB4	B	457	472	Right-handed alpha
Helix 14	AB5	B	660	666	Right-handed alpha
Helix 15	AB6	B	674	678	Right-handed 310
Helix 16	AB7	B	682	687	Right-handed alpha
Helix 17	AB8	B	687	696	Right-handed alpha
Helix 18	AB9	B	698	723	Right-handed alpha

There are 8 sheets in PDB entry 8P7A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	653	657	first strand
Strand 2	A	643	647	anti-parallel
Strand 3	A	630	638	anti-parallel
Strand 4	A	620	627	anti-parallel
Strand 5	A	600	607	anti-parallel
Strand 6	A	584	594	anti-parallel
Strand 7	A	564	568	anti-parallel
Strand 8	A	555	559	anti-parallel
Strand 9	A	530	542	anti-parallel
Strand 10	A	518	525	anti-parallel
Strand 11	A	503	513	anti-parallel
Strand 12	A	491	498	anti-parallel
Strand 13	A	670	672	anti-parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	653	657	first strand
Strand 2	A	643	647	anti-parallel
Strand 3	A	630	638	anti-parallel
Strand 4	A	620	627	anti-parallel
Strand 5	A	600	607	anti-parallel
Strand 6	A	584	594	anti-parallel
Strand 7	A	572	576	anti-parallel
Strand 8	A	547	552	anti-parallel
Strand 9	A	530	542	anti-parallel
Strand 10	A	518	525	anti-parallel
Strand 11	A	503	513	anti-parallel
Strand 12	A	491	498	anti-parallel
Strand 13	A	670	672	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	732	734	first strand
Strand 2	A	741	743	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	756	762	first strand
Strand 2	A	765	770	anti-parallel

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There are 13 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	653	657	first strand
Strand 2	B	643	647	anti-parallel
Strand 3	B	630	638	anti-parallel
Strand 4	B	620	627	anti-parallel
Strand 5	B	600	607	anti-parallel
Strand 6	B	584	594	anti-parallel
Strand 7	B	564	568	anti-parallel
Strand 8	B	555	559	anti-parallel
Strand 9	B	530	542	anti-parallel
Strand 10	B	518	525	anti-parallel
Strand 11	B	503	513	anti-parallel
Strand 12	B	491	498	anti-parallel
Strand 13	B	670	671	anti-parallel

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There are 13 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	653	657	first strand
Strand 2	B	643	647	anti-parallel
Strand 3	B	630	638	anti-parallel
Strand 4	B	620	627	anti-parallel
Strand 5	B	600	607	anti-parallel
Strand 6	B	584	594	anti-parallel
Strand 7	B	572	576	anti-parallel
Strand 8	B	547	552	anti-parallel
Strand 9	B	530	542	anti-parallel
Strand 10	B	518	525	anti-parallel
Strand 11	B	503	513	anti-parallel
Strand 12	B	491	498	anti-parallel
Strand 13	B	670	671	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	732	734	first strand
Strand 2	B	741	743	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	756	762	first strand
Strand 2	B	765	770	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P7A

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P7A