Analysis of interatomic Contacts of Structural Units in PDB entry:
8P7B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P7B entry

There are 25 chains in PDB entry 8P7B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 2	GLU 477
D	VAL 2	PRO 475
A	THR 27	LYS 271
T	G 1	C 11
T	G 13	U 16
T	G 19	G 19
T	U 20	C 25
T	U 27	A 38
T	C 40	A 43
T	U 45	G 47
T	G 49	G 53
T	C 56	G 57
T	A 59	C 74
R	G 1	C 11
R	G 13	U 16
R	G 19	G 19
R	U 20	C 25
R	U 27	A 31
R	U 33	A 36
R	A 38	A 38
R	C 40	A 43
R	U 45	G 47
R	G 49	G 53
R	C 56	G 57
R	A 59	C 74

There are 51 helices in PDB entry 8P7B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	4	8	Right-handed 310
Helix 2	AA2	B	15	26	Right-handed alpha
Helix 3	AA3	B	31	70	Right-handed alpha
Helix 4	AA4	B	91	96	Right-handed alpha
Helix 5	AA5	B	99	133	Right-handed alpha
Helix 6	AA6	B	148	153	Right-handed alpha
Helix 7	AA7	B	169	177	Right-handed alpha
Helix 8	AA8	B	182	189	Right-handed alpha
Helix 9	AA9	B	198	219	Right-handed alpha
Helix 10	AB1	B	231	238	Right-handed alpha
Helix 11	AB2	B	239	246	Right-handed alpha
Helix 12	AB3	B	272	278	Right-handed alpha
Helix 13	AB4	B	279	281	Right-handed 310
Helix 14	AB5	B	309	313	Right-handed 310
Helix 15	AB6	B	335	355	Right-handed alpha
Helix 16	AB7	B	365	369	Right-handed 310
Helix 17	AB8	B	400	407	Right-handed alpha
Helix 18	AB9	B	433	445	Right-handed alpha
Helix 19	AC1	B	453	457	Right-handed 310
Helix 20	AC2	D	4	9	Right-handed 310
Helix 21	AC3	D	15	26	Right-handed alpha
Helix 22	AC4	D	31	69	Right-handed alpha
Helix 23	AC5	D	91	97	Right-handed alpha
Helix 24	AC6	D	99	133	Right-handed alpha
Helix 25	AC7	D	148	153	Right-handed alpha
Helix 26	AC8	D	169	177	Right-handed alpha
Helix 27	AC9	D	182	189	Right-handed alpha
Helix 28	AD1	D	198	218	Right-handed alpha
Helix 29	AD2	D	231	238	Right-handed alpha
Helix 30	AD3	D	239	247	Right-handed alpha
Helix 31	AD4	D	272	278	Right-handed alpha
Helix 32	AD5	D	279	281	Right-handed 310
Helix 33	AD6	D	286	290	Right-handed 310
Helix 34	AD7	D	309	313	Right-handed 310
Helix 35	AD8	D	335	355	Right-handed alpha
Helix 36	AD9	D	365	369	Right-handed 310
Helix 37	AE1	D	400	407	Right-handed alpha
Helix 38	AE2	D	433	444	Right-handed alpha
Helix 39	AE3	D	456	460	Right-handed 310
Helix 40	AE4	A	30	40	Right-handed alpha
Helix 41	AE5	A	40	52	Right-handed alpha
Helix 42	AE6	A	62	67	Right-handed alpha
Helix 43	AE7	A	94	101	Right-handed alpha
Helix 44	AE8	A	112	121	Right-handed alpha
Helix 45	AE9	A	141	145	Right-handed 310
Helix 46	AF1	A	159	163	Right-handed 310
Helix 47	AF2	A	167	177	Right-handed alpha
Helix 48	AF3	A	194	200	Right-handed alpha
Helix 49	AF4	A	201	203	Right-handed 310
Helix 50	AF5	A	223	232	Right-handed alpha
Helix 51	AF6	A	233	235	Right-handed 310

There are 9 sheets in PDB entry 8P7B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	159	first strand
Strand 2	B	359	363	anti-parallel
Strand 3	B	375	383	anti-parallel
Strand 4	B	388	397	anti-parallel
Strand 5	B	424	432	anti-parallel
Strand 6	B	320	330	anti-parallel
Strand 7	B	292	301	anti-parallel
Strand 8	B	221	224	parallel
Strand 9	D	195	197	anti-parallel
Strand 10	D	180	181	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	181	first strand
Strand 2	B	195	197	anti-parallel
Strand 3	D	221	224	anti-parallel
Strand 4	D	292	301	parallel
Strand 5	D	320	330	anti-parallel
Strand 6	D	424	432	anti-parallel
Strand 7	D	388	397	anti-parallel
Strand 8	D	375	383	anti-parallel
Strand 9	D	359	363	anti-parallel
Strand 10	D	154	159	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	230	first strand
Strand 2	B	266	268	anti-parallel
Strand 3	B	249	251	anti-parallel
Strand 4	D	249	251	anti-parallel
Strand 5	D	266	268	anti-parallel
Strand 6	D	228	230	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	284	first strand
Strand 2	B	408	409	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	451	first strand
Strand 2	B	467	469	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	284	first strand
Strand 2	D	408	409	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	449	451	first strand
Strand 2	D	467	469	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	133	first strand
Strand 2	A	104	109	parallel
Strand 3	A	81	86	parallel
Strand 4	A	151	157	parallel
Strand 5	A	179	190	parallel
Strand 6	A	255	267	anti-parallel
Strand 7	A	237	250	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	207	first strand
Strand 2	A	210	212	anti-parallel
Strand 3	A	218	220	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P7B

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P7B