Analysis of interatomic Contacts of Structural Units in PDB entry:
8P7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P7F entry

There is 1 chain in PDB entry 8P7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 36LEU 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 8P7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 49Right-handed 310
Helix 2
AA2
A
61 63Right-handed 310
Helix 3
AA3
A
64 69Right-handed alpha
Helix 4
AA4
A
69 74Right-handed alpha
Helix 5
AA5
A
75 93Right-handed alpha
Helix 6
AA6
A
103 107Right-handed 310
Helix 7
AA7
A
109 121Right-handed alpha
Helix 8
AA8
A
135 140Right-handed alpha
Helix 9
AA9
A
142 156Right-handed alpha
Helix 10
AB1
A
177 195Right-handed alpha
Helix 11
AB2
A
212 219Right-handed alpha
Helix 12
AB3
A
222 224Right-handed 310
Helix 13
AB4
A
231 235Right-handed 310
Helix 14
AB5
A
236 246Right-handed alpha
Helix 15
AB6
A
277 290Right-handed alpha
Helix 16
AB7
A
292 296Right-handed 310
Helix 17
AB8
A
299 303Right-handed 310
Helix 18
AB9
A
323 325Right-handed 310
Helix 19
AC1
A
326 331Right-handed alpha
Helix 20
AC2
A
331 339Right-handed alpha
Helix 21
AC3
A
342 351Right-handed alpha
Helix 22
AC4
A
351 359Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8P7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
42 44anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
97 100parallel
Strand 3
A
123 125parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 130first strand
Strand 2
A
167 170parallel
Strand 3
A
198 201parallel
Strand 4
A
226 230parallel
Strand 5
A
249 252parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il