Analysis of interatomic Contacts of Structural Units in PDB entry:
8P7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P7J entry

There are 2 chains in PDB entry 8P7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 45GLY 333
B
 SER 45GLY 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8P7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 51Right-handed 310
Helix 2
AA2
A
90 105Right-handed alpha
Helix 3
AA3
A
136 146Right-handed alpha
Helix 4
AA4
A
151 174Right-handed alpha
Helix 5
AA5
A
181 183Right-handed 310
Helix 6
AA6
A
221 226Right-handed alpha
Helix 7
AA7
A
235 253Right-handed alpha
Helix 8
AA8
A
262 273Right-handed alpha
Helix 9
AA9
A
284 295Right-handed alpha
Helix 10
AB1
A
304 309Right-handed alpha
Helix 11
AB2
A
311 320Right-handed alpha
Helix 12
AB3
A
323 333Right-handed alpha
Helix 13
AB4
B
49 51Right-handed 310
Helix 14
AB5
B
90 104Right-handed alpha
Helix 15
AB6
B
136 146Right-handed alpha
Helix 16
AB7
B
151 174Right-handed alpha
Helix 17
AB8
B
181 183Right-handed 310
Helix 18
AB9
B
221 226Right-handed alpha
Helix 19
AC1
B
235 253Right-handed alpha
Helix 20
AC2
B
262 273Right-handed alpha
Helix 21
AC3
B
284 295Right-handed alpha
Helix 22
AC4
B
304 309Right-handed alpha
Helix 23
AC5
B
311 320Right-handed alpha
Helix 24
AC6
B
323 333Right-handed alpha
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There are 4 sheets in PDB entry 8P7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 62first strand
Strand 2
A
65 72anti-parallel
Strand 3
A
78 84anti-parallel
Strand 4
A
125 130anti-parallel
Strand 5
A
115 117anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
185 187anti-parallel
Strand 3
A
193 195anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 62first strand
Strand 2
B
65 72anti-parallel
Strand 3
B
78 84anti-parallel
Strand 4
B
124 129anti-parallel
Strand 5
B
115 121anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
185 187anti-parallel
Strand 3
B
193 195anti-parallel
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