Analysis of interatomic Contacts of Structural Units in PDB entry:
8P7W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P7W entry

There are 8 chains in PDB entry 8P7W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 34	TYR 654
B	GLY 34	TYR 654
C	VAL 2	SER 123
D	VAL 2	SER 119
E	ASP 1	ARG 107
F	VAL 2	SER 119
G	ASP 1	ARG 107
Y	VAL 2	SER 123

There are 54 helices in PDB entry 8P7W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	85	94	Right-handed alpha
Helix 2	AA2	A	114	121	Right-handed 310
Helix 3	AA3	A	135	148	Right-handed alpha
Helix 4	AA4	A	153	169	Right-handed alpha
Helix 5	AA5	A	187	199	Right-handed alpha
Helix 6	AA6	A	219	234	Right-handed alpha
Helix 7	AA7	A	246	251	Right-handed alpha
Helix 8	AA8	A	269	271	Right-handed 310
Helix 9	AA9	A	272	279	Right-handed alpha
Helix 10	AB1	A	289	300	Right-handed alpha
Helix 11	AB2	A	328	338	Right-handed alpha
Helix 12	AB3	A	339	352	Right-handed alpha
Helix 13	AB4	A	372	391	Right-handed alpha
Helix 14	AB5	A	394	413	Right-handed alpha
Helix 15	AB6	A	421	440	Right-handed alpha
Helix 16	AB7	A	441	447	Right-handed 310
Helix 17	AB8	A	451	462	Right-handed alpha
Helix 18	AB9	A	465	476	Right-handed alpha
Helix 19	AC1	A	478	494	Right-handed alpha
Helix 20	AC2	A	502	528	Right-handed alpha
Helix 21	AC3	A	536	551	Right-handed alpha
Helix 22	AC4	A	565	571	Right-handed 310
Helix 23	AC5	A	572	586	Right-handed alpha
Helix 24	AC6	A	609	617	Right-handed alpha
Helix 25	AC7	A	623	650	Right-handed alpha
Helix 26	AC8	B	85	94	Right-handed alpha
Helix 27	AC9	B	114	121	Right-handed 310
Helix 28	AD1	B	135	148	Right-handed alpha
Helix 29	AD2	B	153	169	Right-handed alpha
Helix 30	AD3	B	187	200	Right-handed alpha
Helix 31	AD4	B	217	234	Right-handed alpha
Helix 32	AD5	B	246	251	Right-handed alpha
Helix 33	AD6	B	269	271	Right-handed 310
Helix 34	AD7	B	272	279	Right-handed alpha
Helix 35	AD8	B	289	300	Right-handed alpha
Helix 36	AD9	B	328	338	Right-handed alpha
Helix 37	AE1	B	339	352	Right-handed alpha
Helix 38	AE2	B	372	391	Right-handed alpha
Helix 39	AE3	B	394	413	Right-handed alpha
Helix 40	AE4	B	421	440	Right-handed alpha
Helix 41	AE5	B	441	447	Right-handed 310
Helix 42	AE6	B	451	462	Right-handed alpha
Helix 43	AE7	B	465	476	Right-handed alpha
Helix 44	AE8	B	478	494	Right-handed alpha
Helix 45	AE9	B	502	528	Right-handed alpha
Helix 46	AF1	B	536	551	Right-handed alpha
Helix 47	AF2	B	565	571	Right-handed 310
Helix 48	AF3	B	572	586	Right-handed alpha
Helix 49	AF4	B	609	617	Right-handed alpha
Helix 50	AF5	B	623	650	Right-handed alpha
Helix 51	AF6	C	28	32	Right-handed 310
Helix 52	AF7	C	105	109	Right-handed 310
Helix 53	AF8	Y	28	32	Right-handed 310
Helix 54	AF9	Y	105	109	Right-handed 310

There are 20 sheets in PDB entry 8P7W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	71	first strand
Strand 2	A	37	44	anti-parallel
Strand 3	A	105	108	anti-parallel
Strand 4	A	111	112	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	A	206	210	parallel
Strand 3	A	237	241	parallel
Strand 4	A	75	79	parallel
Strand 5	A	255	260	parallel
Strand 6	A	263	268	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	310	first strand
Strand 2	C	112	113	anti-parallel
Strand 3	C	96	99	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	46	49	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	71	first strand
Strand 2	B	37	44	anti-parallel
Strand 3	B	105	108	anti-parallel
Strand 4	B	111	112	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	206	210	parallel
Strand 3	B	237	241	parallel
Strand 4	B	75	79	parallel
Strand 5	B	255	260	parallel
Strand 6	B	263	268	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	70	73	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	17	25	anti-parallel
Strand 3	D	78	84	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	116	117	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	46	52	anti-parallel
Strand 3	D	34	40	anti-parallel
Strand 4	D	98	99	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	46	52	anti-parallel
Strand 3	D	34	40	anti-parallel
Strand 4	D	93	95	anti-parallel
Strand 5	D	113	114	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	5	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	65	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	49	first strand
Strand 2	E	33	38	anti-parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	102	103	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	116	117	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	60	first strand
Strand 2	F	46	52	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	98	99	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	60	first strand
Strand 2	F	46	52	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	93	95	anti-parallel
Strand 5	F	113	114	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	6	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	62	65	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	48	first strand
Strand 2	G	33	38	anti-parallel
Strand 3	G	85	90	anti-parallel
Strand 4	G	102	103	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	4	7	first strand
Strand 2	Y	18	24	anti-parallel
Strand 3	Y	78	83	anti-parallel
Strand 4	Y	70	73	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	46	49	first strand
Strand 2	Y	33	38	anti-parallel
Strand 3	Y	95	99	anti-parallel
Strand 4	Y	112	113	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P7W

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P7W