Analysis of interatomic Contacts of Structural Units in PDB entry:
8P81


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P81 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 8P81 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 716TYR 892
A
 ASN 894HIS 1035
B
 PRO 22GLN 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8P81. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
723 725Right-handed 310
Helix 2
AA2
A
768 779Right-handed alpha
Helix 3
AA3
A
820 827Right-handed alpha
Helix 4
AA4
A
832 853Right-handed alpha
Helix 5
AA5
A
861 863Right-handed 310
Helix 6
AA6
A
898 902Right-handed 310
Helix 7
AA7
A
903 908Right-handed alpha
Helix 8
AA8
A
915 932Right-handed alpha
Helix 9
AA9
A
940 953Right-handed alpha
Helix 10
AB1
A
960 966Right-handed 310
Helix 11
AB2
A
981 986Right-handed alpha
Helix 12
AB3
A
990 1001Right-handed alpha
Helix 13
AB4
A
1010 1015Right-handed alpha
Helix 14
AB5
B
27 32Right-handed alpha
Helix 15
AB6
B
34 39Right-handed alpha
Helix 16
AB7
B
42 64Right-handed alpha
Helix 17
AB8
B
67 82Right-handed alpha
Helix 18
AB9
B
91 107Right-handed alpha
Helix 19
AC1
B
112 124Right-handed alpha
Helix 20
AC2
B
128 133Right-handed 310
Helix 21
AC3
B
135 152Right-handed alpha
Helix 22
AC4
B
159 170Right-handed alpha
Helix 23
AC5
B
174 193Right-handed alpha
Helix 24
AC6
B
194 200Right-handed 310
Helix 25
AC7
B
202 218Right-handed alpha
Helix 26
AC8
B
221 226Right-handed 310
Helix 27
AC9
B
233 238Right-handed 310
Helix 28
AD1
B
243 260Right-handed alpha
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There are 3 sheets in PDB entry 8P81. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
727 735first strand
Strand 2
A
740 746anti-parallel
Strand 3
A
752 759anti-parallel
Strand 4
A
808 814anti-parallel
Strand 5
A
789 794anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
818 819first strand
Strand 2
A
865 867anti-parallel
Strand 3
A
873 875anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
855 856first strand
Strand 2
A
882 883anti-parallel
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