Analysis of interatomic Contacts of Structural Units in PDB entry:
8P8A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P8A entry

There are 7 chains in PDB entry 8P8A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ASP 1	ARG 107
D	VAL 2	SER 119
E	ASP 1	ARG 107
F	VAL 2	SER 119
Z	GLN 1	VAL 121
A	GLU 33	TYR 654
B	GLU 33	TYR 654

There are 50 helices in PDB entry 8P8A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	85	94	Right-handed alpha
Helix 2	AA2	A	135	148	Right-handed alpha
Helix 3	AA3	A	153	168	Right-handed alpha
Helix 4	AA4	A	187	198	Right-handed alpha
Helix 5	AA5	A	217	233	Right-handed alpha
Helix 6	AA6	A	246	251	Right-handed alpha
Helix 7	AA7	A	271	278	Right-handed alpha
Helix 8	AA8	A	289	300	Right-handed alpha
Helix 9	AA9	A	328	337	Right-handed alpha
Helix 10	AB1	A	341	351	Right-handed alpha
Helix 11	AB2	A	372	390	Right-handed alpha
Helix 12	AB3	A	396	413	Right-handed alpha
Helix 13	AB4	A	421	441	Right-handed alpha
Helix 14	AB5	A	442	448	Right-handed 310
Helix 15	AB6	A	451	461	Right-handed alpha
Helix 16	AB7	A	465	478	Right-handed alpha
Helix 17	AB8	A	478	483	Right-handed alpha
Helix 18	AB9	A	483	498	Right-handed alpha
Helix 19	AC1	A	503	529	Right-handed alpha
Helix 20	AC2	A	534	549	Right-handed alpha
Helix 21	AC3	A	550	553	Right-handed 310
Helix 22	AC4	A	565	571	Right-handed 310
Helix 23	AC5	A	572	587	Right-handed alpha
Helix 24	AC6	A	609	618	Right-handed alpha
Helix 25	AC7	A	623	650	Right-handed alpha
Helix 26	AC8	B	85	94	Right-handed alpha
Helix 27	AC9	B	135	148	Right-handed alpha
Helix 28	AD1	B	153	168	Right-handed alpha
Helix 29	AD2	B	187	198	Right-handed alpha
Helix 30	AD3	B	217	233	Right-handed alpha
Helix 31	AD4	B	246	251	Right-handed alpha
Helix 32	AD5	B	271	278	Right-handed alpha
Helix 33	AD6	B	289	298	Right-handed alpha
Helix 34	AD7	B	328	337	Right-handed alpha
Helix 35	AD8	B	341	351	Right-handed alpha
Helix 36	AD9	B	372	390	Right-handed alpha
Helix 37	AE1	B	396	413	Right-handed alpha
Helix 38	AE2	B	421	441	Right-handed alpha
Helix 39	AE3	B	442	448	Right-handed 310
Helix 40	AE4	B	451	461	Right-handed alpha
Helix 41	AE5	B	465	478	Right-handed alpha
Helix 42	AE6	B	478	483	Right-handed alpha
Helix 43	AE7	B	483	498	Right-handed alpha
Helix 44	AE8	B	503	529	Right-handed alpha
Helix 45	AE9	B	534	549	Right-handed alpha
Helix 46	AF1	B	550	553	Right-handed 310
Helix 47	AF2	B	565	571	Right-handed 310
Helix 48	AF3	B	572	587	Right-handed alpha
Helix 49	AF4	B	609	618	Right-handed alpha
Helix 50	AF5	B	623	650	Right-handed alpha

There are 14 sheets in PDB entry 8P8A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	62	67	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	45	49	anti-parallel
Strand 3	C	33	38	anti-parallel
Strand 4	C	85	90	anti-parallel
Strand 5	C	102	103	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	46	52	anti-parallel
Strand 3	D	34	40	anti-parallel
Strand 4	D	93	99	anti-parallel
Strand 5	D	113	114	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	5	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	67	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	45	49	anti-parallel
Strand 3	E	33	38	anti-parallel
Strand 4	E	85	90	anti-parallel
Strand 5	E	102	103	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	60	first strand
Strand 2	F	46	52	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	93	99	anti-parallel
Strand 5	F	113	114	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	3	5	first strand
Strand 2	Z	19	25	anti-parallel
Strand 3	Z	78	83	anti-parallel
Strand 4	Z	68	73	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	58	60	first strand
Strand 2	Z	46	51	anti-parallel
Strand 3	Z	34	39	anti-parallel
Strand 4	Z	92	98	anti-parallel
Strand 5	Z	117	119	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	71	first strand
Strand 2	A	37	40	anti-parallel
Strand 3	A	105	108	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	A	206	210	parallel
Strand 3	A	237	241	parallel
Strand 4	A	75	79	parallel
Strand 5	A	255	260	parallel
Strand 6	A	263	268	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	71	first strand
Strand 2	B	37	40	anti-parallel
Strand 3	B	105	108	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	206	210	parallel
Strand 3	B	237	241	parallel
Strand 4	B	75	79	parallel
Strand 5	B	255	260	parallel
Strand 6	B	263	268	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P8A

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P8A