Analysis of interatomic Contacts of Structural Units in PDB entry:
8P8B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P8B entry

There are 10 chains in PDB entry 8P8B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	MET 1	ARG 48
1	MET 1	ILE 59
2	MET 1	GLY 37
3	A 8	U 782
3	A 784	G 2258
3	G 2260	G 2510
3	U 2512	U 2900
4	U 1	C 108
5	C 1374	C 1374
5	G 1376	G 1376

There are 96 helices in PDB entry 8P8B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	0	8	17	Right-handed alpha
Helix 2	AA2	0	17	22	Right-handed alpha
Helix 3	AA3	0	24	37	Right-handed alpha
Helix 4	AA4	1	29	33	Right-handed 310
Helix 5	AA5	1	34	43	Right-handed alpha
Helix 6	AA6	1	48	57	Right-handed alpha
Helix 7	AA7	2	29	32	Right-handed 310
Helix 8	AA8	X	30	34	Right-handed alpha
Helix 9	AA9	a	215	223	Right-handed alpha
Helix 10	AB1	a	229	233	Right-handed 310
Helix 11	AB2	a	274	276	Right-handed 310
Helix 12	AB3	b	41	46	Right-handed alpha
Helix 13	AB4	b	58	62	Right-handed 310
Helix 14	AB5	b	63	74	Right-handed alpha
Helix 15	AB6	b	97	102	Right-handed alpha
Helix 16	AB7	b	121	127	Right-handed alpha
Helix 17	AB8	c	31	43	Right-handed alpha
Helix 18	AB9	c	104	120	Right-handed alpha
Helix 19	AC1	c	129	136	Right-handed alpha
Helix 20	AC2	c	139	150	Right-handed alpha
Helix 21	AC3	c	165	171	Right-handed alpha
Helix 22	AC4	c	187	193	Right-handed alpha
Helix 23	AC5	c	201	212	Right-handed alpha
Helix 24	AC6	d	3	21	Right-handed alpha
Helix 25	AC7	d	24	28	Right-handed 310
Helix 26	AC8	d	40	45	Right-handed 310
Helix 27	AC9	d	46	62	Right-handed alpha
Helix 28	AD1	d	92	106	Right-handed alpha
Helix 29	AD2	d	107	111	Right-handed 310
Helix 30	AD3	d	162	174	Right-handed alpha
Helix 31	AD4	e	61	84	Right-handed alpha
Helix 32	AD5	e	140	153	Right-handed alpha
Helix 33	AD6	f	22	29	Right-handed alpha
Helix 34	AD7	f	39	42	Right-handed 310
Helix 35	AD8	f	43	75	Right-handed alpha
Helix 36	AD9	f	96	101	Right-handed alpha
Helix 37	AE1	g	4	21	Right-handed alpha
Helix 38	AE2	g	33	45	Right-handed alpha
Helix 39	AE3	g	55	66	Right-handed alpha
Helix 40	AE4	g	70	74	Right-handed 310
Helix 41	AE5	g	89	103	Right-handed alpha
Helix 42	AE6	g	119	127	Right-handed alpha
Helix 43	AE7	h	23	28	Right-handed alpha
Helix 44	AE8	h	31	42	Right-handed alpha
Helix 45	AE9	h	43	47	Right-handed 310
Helix 46	AF1	h	73	80	Right-handed alpha
Helix 47	AF2	h	97	109	Right-handed alpha
Helix 48	AF3	h	116	132	Right-handed alpha
Helix 49	AF4	i	27	41	Right-handed alpha
Helix 50	AF5	i	70	75	Right-handed alpha
Helix 51	AF6	i	92	98	Right-handed alpha
Helix 52	AF7	i	99	111	Right-handed alpha
Helix 53	AF8	i	117	124	Right-handed alpha
Helix 54	AF9	i	135	139	Right-handed 310
Helix 55	AG1	j	104	109	Right-handed alpha
Helix 56	AG2	j	111	117	Right-handed alpha
Helix 57	AG3	k	38	42	Right-handed 310
Helix 58	AG4	k	57	62	Right-handed alpha
Helix 59	AG5	k	82	86	Right-handed alpha
Helix 60	AG6	k	94	101	Right-handed alpha
Helix 61	AG7	k	132	142	Right-handed alpha
Helix 62	AG8	l	44	58	Right-handed alpha
Helix 63	AG9	l	110	124	Right-handed alpha
Helix 64	AH1	m	10	28	Right-handed alpha
Helix 65	AH2	m	35	52	Right-handed alpha
Helix 66	AH3	m	56	64	Right-handed alpha
Helix 67	AH4	m	76	85	Right-handed alpha
Helix 68	AH5	m	86	90	Right-handed 310
Helix 69	AH6	n	3	23	Right-handed alpha
Helix 70	AH7	n	56	61	Right-handed alpha
Helix 71	AH8	n	66	84	Right-handed alpha
Helix 72	AH9	n	100	111	Right-handed alpha
Helix 73	AI1	o	5	16	Right-handed alpha
Helix 74	AI2	o	101	106	Right-handed 310
Helix 75	AI3	o	108	113	Right-handed 310
Helix 76	AI4	p	7	20	Right-handed alpha
Helix 77	AI5	p	25	30	Right-handed alpha
Helix 78	AI6	p	30	70	Right-handed alpha
Helix 79	AI7	p	74	85	Right-handed alpha
Helix 80	AI8	p	90	101	Right-handed alpha
Helix 81	AI9	p	101	115	Right-handed alpha
Helix 82	AJ1	r	13	22	Right-handed alpha
Helix 83	AJ2	r	28	38	Right-handed alpha
Helix 84	AJ3	r	41	45	Right-handed 310
Helix 85	AJ4	r	46	60	Right-handed alpha
Helix 86	AJ5	r	112	142	Right-handed alpha
Helix 87	AJ6	s	13	20	Right-handed alpha
Helix 88	AJ7	s	36	48	Right-handed alpha
Helix 89	AJ8	u	87	91	Right-handed 310
Helix 90	AJ9	v	52	61	Right-handed alpha
Helix 91	AK1	w	3	10	Right-handed alpha
Helix 92	AK2	w	11	35	Right-handed alpha
Helix 93	AK3	w	42	61	Right-handed alpha
Helix 94	AK4	w	65	72	Right-handed alpha
Helix 95	AK5	w	80	111	Right-handed alpha
Helix 96	AK6	y	9	18	Right-handed alpha

There are 55 sheets in PDB entry 8P8B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	12	13	first strand
Strand 2	1	19	21	anti-parallel
Strand 3	1	45	46	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	2	3	first strand
Strand 2	2	34	35	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	15	19	first strand
Strand 2	2	22	26	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	3	5	first strand
Strand 2	a	18	20	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	38	40	first strand
Strand 2	a	65	67	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	106	110	first strand
Strand 2	a	96	101	anti-parallel
Strand 3	a	81	87	anti-parallel
Strand 4	a	120	121	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	135	137	first strand
Strand 2	a	197	200	anti-parallel
Strand 3	a	147	148	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	150	151	first strand
Strand 2	a	158	160	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	169	170	first strand
Strand 2	a	180	183	anti-parallel
Strand 3	a	188	192	anti-parallel
Strand 4	a	278	281	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	5	18	first strand
Strand 2	b	22	30	anti-parallel
Strand 3	b	190	194	anti-parallel
Strand 4	b	173	185	anti-parallel
Strand 5	b	107	113	anti-parallel
Strand 6	b	204	209	anti-parallel
Strand 7	b	5	18	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	78	85	first strand
Strand 2	b	49	56	anti-parallel
Strand 3	b	34	40	anti-parallel
Strand 4	b	95	96	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	118	120	first strand
Strand 2	b	167	169	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	4	7	first strand
Strand 2	c	13	18	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	127	128	first strand
Strand 2	c	197	200	parallel
Strand 3	c	158	161	parallel
Strand 4	c	179	182	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	34	38	first strand
Strand 2	d	84	91	anti-parallel
Strand 3	d	66	69	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	128	132	first strand
Strand 2	d	152	156	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	17	20	first strand
Strand 2	e	24	28	anti-parallel
Strand 3	e	34	37	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	44	48	first strand
Strand 2	e	53	57	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	125	127	first strand
Strand 2	e	133	138	anti-parallel
Strand 3	e	86	93	anti-parallel
Strand 4	e	164	167	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	98	102	first strand
Strand 2	e	105	109	anti-parallel
Strand 3	e	116	119	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	2	4	first strand
Strand 2	f	18	20	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	130	132	first strand
Strand 2	f	140	142	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	23	26	first strand
Strand 2	g	109	113	anti-parallel
Strand 3	g	116	117	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	50	52	first strand
Strand 2	g	82	84	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	10	12	first strand
Strand 2	h	53	55	anti-parallel
Strand 3	h	65	67	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	95	96	first strand
Strand 2	h	134	135	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	125	127	first strand
Strand 2	i	57	60	parallel
Strand 3	i	19	22	parallel
Strand 4	i	141	142	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	76	80	first strand
Strand 2	i	87	91	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	7	10	first strand
Strand 2	j	16	23	anti-parallel
Strand 3	j	38	46	anti-parallel
Strand 4	j	57	64	anti-parallel
Strand 5	j	83	86	anti-parallel
Strand 6	j	7	10	parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	69	70	first strand
Strand 2	j	76	78	anti-parallel
Strand 3	o	73	80	anti-parallel
Strand 4	o	63	70	anti-parallel
Strand 5	o	50	56	anti-parallel
Strand 6	o	29	38	anti-parallel
Strand 7	o	43	47	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	69	70	first strand
Strand 2	j	76	78	anti-parallel
Strand 3	o	73	80	anti-parallel
Strand 4	o	63	70	anti-parallel
Strand 5	o	50	56	anti-parallel
Strand 6	o	29	38	anti-parallel
Strand 7	o	86	93	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	102	103	first strand
Strand 2	j	121	122	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	78	81	first strand
Strand 2	k	112	115	parallel
Strand 3	k	130	131	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	125	128	first strand
Strand 2	k	145	148	parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	63	66	first strand
Strand 2	l	102	107	anti-parallel
Strand 3	l	32	36	anti-parallel
Strand 4	l	129	133	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	40	43	first strand
Strand 2	l	89	97	anti-parallel
Strand 3	l	72	76	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	30	34	first strand
Strand 2	m	112	118	anti-parallel
Strand 3	m	98	105	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	50	55	first strand
Strand 2	n	39	45	anti-parallel
Strand 3	n	28	34	anti-parallel
Strand 4	n	89	93	parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	10	15	first strand
Strand 2	q	2	7	anti-parallel
Strand 3	q	38	41	anti-parallel
Strand 4	q	44	45	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	19	23	first strand
Strand 2	q	89	98	anti-parallel
Strand 3	q	54	61	anti-parallel
Strand 4	q	32	35	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	68	74	first strand
Strand 2	q	79	85	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	2	10	first strand
Strand 2	r	101	108	anti-parallel
Strand 3	r	70	78	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	82	87	first strand
Strand 2	r	93	98	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	9	10	first strand
Strand 2	s	26	31	anti-parallel
Strand 3	s	78	84	anti-parallel
Strand 4	s	54	60	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	64	65	first strand
Strand 2	s	73	74	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	69	70	first strand
Strand 2	t	33	36	anti-parallel
Strand 3	t	22	28	anti-parallel
Strand 4	t	9	12	anti-parallel
Strand 5	t	74	76	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	89	90	first strand
Strand 2	t	103	104	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	u	36	37	first strand
Strand 2	u	50	53	anti-parallel
Strand 3	u	73	75	anti-parallel
Strand 4	u	65	66	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	u	44	45	first strand
Strand 2	u	79	86	anti-parallel
Strand 3	u	92	98	anti-parallel
Strand 4	u	59	61	parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	13	16	first strand
Strand 2	v	26	29	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	33	38	first strand
Strand 2	v	46	51	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	x	23	27	first strand
Strand 2	x	10	16	anti-parallel
Strand 3	x	34	36	parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	27	29	first strand
Strand 2	y	36	38	anti-parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	47	48	first strand
Strand 2	y	51	52	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	z	17	22	first strand
Strand 2	z	6	11	anti-parallel
Strand 3	z	43	50	anti-parallel
Strand 4	z	33	38	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P8B

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P8B