Analysis of interatomic Contacts of Structural Units in PDB entry:
8P8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P8F entry

There are 2 chains in PDB entry 8P8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6ALA 314
B
 THR 6ALA 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8P8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 22Right-handed alpha
Helix 2
AA2
A
27 31Right-handed 310
Helix 3
AA3
A
32 48Right-handed alpha
Helix 4
AA4
A
102 114Right-handed alpha
Helix 5
AA5
A
131 148Right-handed alpha
Helix 6
AA6
A
159 175Right-handed alpha
Helix 7
AA7
A
197 204Right-handed alpha
Helix 8
AA8
A
210 222Right-handed alpha
Helix 9
AA9
A
231 235Right-handed 310
Helix 10
AB1
A
253 267Right-handed alpha
Helix 11
AB2
A
282 286Right-handed 310
Helix 12
AB3
A
292 313Right-handed alpha
Helix 13
AB4
B
10 22Right-handed alpha
Helix 14
AB5
B
27 31Right-handed 310
Helix 15
AB6
B
32 48Right-handed alpha
Helix 16
AB7
B
102 114Right-handed alpha
Helix 17
AB8
B
131 148Right-handed alpha
Helix 18
AB9
B
159 175Right-handed alpha
Helix 19
AC1
B
197 204Right-handed alpha
Helix 20
AC2
B
210 222Right-handed alpha
Helix 21
AC3
B
231 235Right-handed 310
Helix 22
AC4
B
253 267Right-handed alpha
Helix 23
AC5
B
282 286Right-handed 310
Helix 24
AC6
B
292 314Right-handed alpha
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There are 3 sheets in PDB entry 8P8F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 62first strand
Strand 2
A
69 75anti-parallel
Strand 3
A
117 120anti-parallel
Strand 4
A
84 89parallel
Strand 5
A
152 158parallel
Strand 6
A
181 187parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 248first strand
Strand 2
A
271 276parallel
Strand 3
B
271 276anti-parallel
Strand 4
B
243 248parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 62first strand
Strand 2
B
69 75anti-parallel
Strand 3
B
117 120anti-parallel
Strand 4
B
85 89parallel
Strand 5
B
153 158parallel
Strand 6
B
181 187parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il