Analysis of interatomic Contacts of Structural Units in PDB entry:
8P8J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P8J entry

There are 7 chains in PDB entry 8P8J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 35	TYR 654
E	ASP 1	ARG 107
F	VAL 2	SER 119
A	LEU 28	TYR 654
Z	GLN 3	THR 124
D	VAL 2	SER 119
C	ASP 1	ARG 107

There are 52 helices in PDB entry 8P8J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	85	94	Right-handed alpha
Helix 2	AA2	B	137	148	Right-handed alpha
Helix 3	AA3	B	153	168	Right-handed alpha
Helix 4	AA4	B	187	199	Right-handed alpha
Helix 5	AA5	B	220	232	Right-handed alpha
Helix 6	AA6	B	246	251	Right-handed alpha
Helix 7	AA7	B	272	277	Right-handed alpha
Helix 8	AA8	B	289	300	Right-handed alpha
Helix 9	AA9	B	333	338	Right-handed alpha
Helix 10	AB1	B	339	344	Right-handed alpha
Helix 11	AB2	B	344	350	Right-handed alpha
Helix 12	AB3	B	372	390	Right-handed alpha
Helix 13	AB4	B	395	413	Right-handed alpha
Helix 14	AB5	B	421	440	Right-handed alpha
Helix 15	AB6	B	441	448	Right-handed 310
Helix 16	AB7	B	449	450	Right-handed 310
Helix 17	AB8	B	451	462	Right-handed alpha
Helix 18	AB9	B	465	474	Right-handed alpha
Helix 19	AC1	B	483	489	Right-handed alpha
Helix 20	AC2	B	493	498	Right-handed alpha
Helix 21	AC3	B	502	529	Right-handed alpha
Helix 22	AC4	B	535	551	Right-handed alpha
Helix 23	AC5	B	565	571	Right-handed 310
Helix 24	AC6	B	573	586	Right-handed alpha
Helix 25	AC7	B	611	618	Right-handed alpha
Helix 26	AC8	B	622	650	Right-handed alpha
Helix 27	AC9	A	85	94	Right-handed alpha
Helix 28	AD1	A	135	148	Right-handed alpha
Helix 29	AD2	A	153	169	Right-handed alpha
Helix 30	AD3	A	190	198	Right-handed alpha
Helix 31	AD4	A	218	235	Right-handed alpha
Helix 32	AD5	A	246	251	Right-handed alpha
Helix 33	AD6	A	272	278	Right-handed alpha
Helix 34	AD7	A	289	298	Right-handed alpha
Helix 35	AD8	A	329	337	Right-handed alpha
Helix 36	AD9	A	341	354	Right-handed alpha
Helix 37	AE1	A	372	390	Right-handed alpha
Helix 38	AE2	A	395	413	Right-handed alpha
Helix 39	AE3	A	421	440	Right-handed alpha
Helix 40	AE4	A	441	446	Right-handed 310
Helix 41	AE5	A	451	460	Right-handed alpha
Helix 42	AE6	A	465	478	Right-handed alpha
Helix 43	AE7	A	483	488	Right-handed alpha
Helix 44	AE8	A	492	498	Right-handed alpha
Helix 45	AE9	A	502	526	Right-handed alpha
Helix 46	AF1	A	533	551	Right-handed alpha
Helix 47	AF2	A	565	572	Right-handed 310
Helix 48	AF3	A	573	584	Right-handed alpha
Helix 49	AF4	A	609	618	Right-handed alpha
Helix 50	AF5	A	622	650	Right-handed alpha
Helix 51	AF6	Z	30	34	Right-handed 310
Helix 52	AF7	Z	54	58	Right-handed 310

There are 19 sheets in PDB entry 8P8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	71	first strand
Strand 2	B	37	39	anti-parallel
Strand 3	B	106	108	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	124	first strand
Strand 2	B	206	209	parallel
Strand 3	B	237	240	parallel
Strand 4	B	75	79	parallel
Strand 5	B	255	260	parallel
Strand 6	B	263	268	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	5	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	65	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	46	first strand
Strand 2	E	33	38	anti-parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	102	103	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	17	25	anti-parallel
Strand 3	F	78	84	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	116	117	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	60	first strand
Strand 2	F	45	52	anti-parallel
Strand 3	F	34	41	anti-parallel
Strand 4	F	98	99	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	60	first strand
Strand 2	F	45	52	anti-parallel
Strand 3	F	34	41	anti-parallel
Strand 4	F	93	95	anti-parallel
Strand 5	F	113	114	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	69	first strand
Strand 2	A	38	44	anti-parallel
Strand 3	A	105	107	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	75	79	parallel
Strand 3	A	255	260	parallel
Strand 4	A	263	269	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	124	first strand
Strand 2	A	208	209	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	23	25	first strand
Strand 2	Z	80	84	anti-parallel
Strand 3	Z	71	75	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	48	52	first strand
Strand 2	Z	35	41	anti-parallel
Strand 3	Z	94	101	anti-parallel
Strand 4	Z	121	123	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	17	25	anti-parallel
Strand 3	D	78	84	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	116	117	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	45	52	anti-parallel
Strand 3	D	34	41	anti-parallel
Strand 4	D	98	99	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	45	52	anti-parallel
Strand 3	D	34	41	anti-parallel
Strand 4	D	93	95	anti-parallel
Strand 5	D	113	114	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	62	65	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	33	38	anti-parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	102	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P8J

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P8J