Analysis of interatomic Contacts of Structural Units in PDB entry:
8P8X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P8X entry

There is 1 chain in PDB entry 8P8X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 12PHE 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8P8X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 36Right-handed alpha
Helix 2
AA2
A
41 45Right-handed 310
Helix 3
AA3
A
48 64Right-handed alpha
Helix 4
AA4
A
86 90Right-handed alpha
Helix 5
AA5
A
91 94Right-handed 310
Helix 6
AA6
A
99 107Right-handed 310
Helix 7
AA7
A
119 122Right-handed 310
Helix 8
AA8
A
123 130Right-handed alpha
Helix 9
AA9
A
165 170Right-handed alpha
Helix 10
AB1
A
175 179Right-handed 310
Helix 11
AB2
A
196 220Right-handed alpha
Helix 12
AB3
A
259 266Right-handed alpha
Helix 13
AB4
A
280 288Right-handed alpha
Helix 14
AB5
A
292 298Right-handed 310
Helix 15
AB6
A
300 305Right-handed alpha
Helix 16
AB7
A
306 308Right-handed 310
Helix 17
AB8
A
341 353Right-handed alpha
Helix 18
AB9
A
390 410Right-handed alpha
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There are 4 sheets in PDB entry 8P8X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
20 23anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
134 142parallel
Strand 3
A
154 164anti-parallel
Strand 4
A
272 279anti-parallel
Strand 5
A
248 258anti-parallel
Strand 6
A
235 245anti-parallel
Strand 7
A
225 232anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
A
114 116anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 367first strand
Strand 2
A
374 382anti-parallel
Strand 3
A
327 334anti-parallel
Strand 4
A
412 413anti-parallel
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