Analysis of interatomic Contacts of Structural Units in PDB entry:
8P98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P98 entry

There are 2 chains in PDB entry 8P98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 48GLY 700
B
 CYS 21LYS 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8P98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 67Right-handed alpha
Helix 2
AA2
A
73 82Right-handed alpha
Helix 3
AA3
A
103 105Right-handed 310
Helix 4
AA4
A
125 129Right-handed 310
Helix 5
AA5
A
143 148Right-handed 310
Helix 6
AA6
A
475 481Right-handed alpha
Helix 7
AA7
A
636 640Right-handed 310
Helix 8
AA8
B
67 74Right-handed alpha
Helix 9
AA9
B
97 99Right-handed 310
Helix 10
AB1
B
162 166Right-handed 310
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There are 14 sheets in PDB entry 8P98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
136 141anti-parallel
Strand 3
A
155 160anti-parallel
Strand 4
A
107 111parallel
Strand 5
A
114 115anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
96 98anti-parallel
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There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 442first strand
Strand 2
A
427 438anti-parallel
Strand 3
A
407 421anti-parallel
Strand 4
A
364 378anti-parallel
Strand 5
A
341 359anti-parallel
Strand 6
A
312 329anti-parallel
Strand 7
A
290 307anti-parallel
Strand 8
A
261 275anti-parallel
Strand 9
A
244 256anti-parallel
Strand 10
A
196 207anti-parallel
Strand 11
A
182 192anti-parallel
Strand 12
A
168 178anti-parallel
Strand 13
A
688 697anti-parallel
Strand 14
A
660 669anti-parallel
Strand 15
A
644 656anti-parallel
Strand 16
A
615 624anti-parallel
Strand 17
A
602 612anti-parallel
Strand 18
A
565 575anti-parallel
Strand 19
A
546 560anti-parallel
Strand 20
A
578 580anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 442first strand
Strand 2
A
427 438anti-parallel
Strand 3
A
446 456anti-parallel
Strand 4
A
461 472anti-parallel
Strand 5
A
492 507anti-parallel
Strand 6
A
511 525anti-parallel
Strand 7
A
546 560anti-parallel
Strand 8
A
578 580anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
236 238anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 222first strand
Strand 2
A
231 233anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
530 532first strand
Strand 2
A
538 540anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 66first strand
Strand 2
B
53 58anti-parallel
Strand 3
B
39 43anti-parallel
Strand 4
B
349 354anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 87first strand
Strand 2
B
90 95anti-parallel
Strand 3
B
100 105anti-parallel
Strand 4
B
111 115anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 126first strand
Strand 2
B
132 136anti-parallel
Strand 3
B
141 145anti-parallel
Strand 4
B
152 157anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 174first strand
Strand 2
B
177 181anti-parallel
Strand 3
B
188 193anti-parallel
Strand 4
B
198 204anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 213first strand
Strand 2
B
219 224anti-parallel
Strand 3
B
239 244anti-parallel
Strand 4
B
249 255anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 276first strand
Strand 2
B
282 285anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
304 309first strand
Strand 2
B
316 320anti-parallel
Strand 3
B
327 333anti-parallel
Strand 4
B
339 347anti-parallel
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