Analysis of interatomic Contacts of Structural Units in PDB entry:
8P9D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P9D entry

There are 6 chains in PDB entry 8P9D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 359HIS 404
B
 SER 350GLN 397
C
 ASP 359HIS 404
D
 GLU 352GLN 397
E
 SER 2ALA 126
F
 SER 2ALA 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8P9D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
368 384Right-handed alpha
Helix 2
AA2
A
385 388Right-handed 310
Helix 3
AA3
A
389 402Right-handed alpha
Helix 4
AA4
B
361 378Right-handed alpha
Helix 5
AA5
B
379 381Right-handed 310
Helix 6
AA6
B
382 394Right-handed alpha
Helix 7
AA7
B
395 397Right-handed 310
Helix 8
AA8
C
368 384Right-handed alpha
Helix 9
AA9
C
385 388Right-handed 310
Helix 10
AB1
C
389 402Right-handed alpha
Helix 11
AB2
D
361 378Right-handed alpha
Helix 12
AB3
D
379 381Right-handed 310
Helix 13
AB4
D
382 396Right-handed alpha
Helix 14
AB5
E
3 14Right-handed alpha
Helix 15
AB6
E
16 26Right-handed alpha
Helix 16
AB7
E
39 48Right-handed alpha
Helix 17
AB8
E
49 59Right-handed alpha
Helix 18
AB9
E
72 81Right-handed alpha
Helix 19
AC1
E
82 92Right-handed alpha
Helix 20
AC2
E
105 113Right-handed alpha
Helix 21
AC3
E
115 125Right-handed alpha
Helix 22
AC4
F
3 14Right-handed alpha
Helix 23
AC5
F
16 26Right-handed alpha
Helix 24
AC6
F
39 48Right-handed alpha
Helix 25
AC7
F
49 59Right-handed alpha
Helix 26
AC8
F
72 81Right-handed alpha
Helix 27
AC9
F
82 92Right-handed alpha
Helix 28
AD1
F
105 113Right-handed alpha
Helix 29
AD2
F
115 125Right-handed alpha
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There are 2 sheets in PDB entry 8P9D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 367first strand
Strand 2
C
361 367anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 360first strand
Strand 2
D
354 360anti-parallel
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