Analysis of interatomic Contacts of Structural Units in PDB entry:
8P9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P9E entry

There are 3 chains in PDB entry 8P9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 357SER 413
B
 GLU 352GLN 397
C
 GLY 1ALA 159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8P9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
368 385Right-handed alpha
Helix 2
AA2
A
386 388Right-handed 310
Helix 3
AA3
A
389 404Right-handed alpha
Helix 4
AA4
B
361 378Right-handed alpha
Helix 5
AA5
B
379 381Right-handed 310
Helix 6
AA6
B
382 396Right-handed alpha
Helix 7
AA7
C
2 15Right-handed alpha
Helix 8
AA8
C
16 26Right-handed alpha
Helix 9
AA9
C
39 48Right-handed alpha
Helix 10
AB1
C
49 57Right-handed alpha
Helix 11
AB2
C
72 81Right-handed alpha
Helix 12
AB3
C
82 92Right-handed alpha
Helix 13
AB4
C
105 114Right-handed alpha
Helix 14
AB5
C
115 125Right-handed alpha
Helix 15
AB6
C
138 146Right-handed alpha
Helix 16
AB7
C
148 157Right-handed alpha
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There are no sheets in PDB entry 8P9E
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il