Analysis of interatomic Contacts of Structural Units in PDB entry:
8PA0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PA0 entry

There are 2 chains in PDB entry 8PA0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 85THR 162
A
 GLY 2628PRO 2725
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 8PA0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
97 100Right-handed 310
Helix 2
AA2
B
138 142Right-handed 310
Helix 3
AA3
A
2634 2638Right-handed 310
Helix 4
AA4
A
2642 2646Right-handed 310
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There are 4 sheets in PDB entry 8PA0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 92first strand
Strand 2
B
151 157anti-parallel
Strand 3
B
143 146anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 132first strand
Strand 2
B
109 117anti-parallel
Strand 3
B
102 105anti-parallel
Strand 4
A
2668 2673parallel
Strand 5
A
2702 2710anti-parallel
Strand 6
A
2713 2714anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 132first strand
Strand 2
B
109 117anti-parallel
Strand 3
B
102 105anti-parallel
Strand 4
A
2668 2673parallel
Strand 5
A
2702 2710anti-parallel
Strand 6
A
2720 2724anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2639 2641first strand
Strand 2
A
2654 2659anti-parallel
Strand 3
A
2691 2696anti-parallel
Strand 4
A
2682 2688anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il