Analysis of interatomic Contacts of Structural Units in PDB entry:
8PAT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PAT entry

There are 3 chains in PDB entry 8PAT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -2LEU 366
H
 GLN 2GLN 2
H
 LEU 5PHE 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8PAT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 18Right-handed alpha
Helix 2
AA2
A
27 30Right-handed 310
Helix 3
AA3
A
72 82Right-handed alpha
Helix 4
AA4
A
112 116Right-handed 310
Helix 5
AA5
A
131 141Right-handed alpha
Helix 6
AA6
A
142 146Right-handed 310
Helix 7
AA7
A
152 155Right-handed 310
Helix 8
AA8
A
197 207Right-handed alpha
Helix 9
AA9
A
243 248Right-handed alpha
Helix 10
AB1
A
260 272Right-handed alpha
Helix 11
AB2
A
321 332Right-handed alpha
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There are 3 sheets in PDB entry 8PAT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 109first strand
Strand 2
A
96 101anti-parallel
Strand 3
A
87 93anti-parallel
Strand 4
A
-1 6anti-parallel
Strand 5
A
64 71anti-parallel
Strand 6
A
32 38anti-parallel
Strand 7
A
41 47anti-parallel
Strand 8
A
51 58anti-parallel
Strand 9
A
230 235anti-parallel
Strand 10
A
222 227anti-parallel
Strand 11
A
214 219anti-parallel
Strand 12
A
124 130anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 196first strand
Strand 2
A
157 163anti-parallel
Strand 3
A
166 172anti-parallel
Strand 4
A
176 183anti-parallel
Strand 5
A
357 361anti-parallel
Strand 6
A
347 351anti-parallel
Strand 7
A
335 340anti-parallel
Strand 8
A
254 259anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 307first strand
Strand 2
A
289 295anti-parallel
Strand 3
A
280 286anti-parallel
Strand 4
A
315 320anti-parallel
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