Analysis of interatomic Contacts of Structural Units in PDB entry:
8PB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PB8 entry

There are 2 chains in PDB entry 8PB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -11PHE 309
B
 GLY -12PHE 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8PB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-11 -2Right-handed alpha
Helix 2
AA2
A
5 9Right-handed 310
Helix 3
AA3
A
12 20Right-handed alpha
Helix 4
AA4
A
21 25Right-handed 310
Helix 5
AA5
A
41 58Right-handed alpha
Helix 6
AA6
A
71 94Right-handed alpha
Helix 7
AA7
A
112 122Right-handed alpha
Helix 8
AA8
A
133 147Right-handed alpha
Helix 9
AA9
A
165 171Right-handed alpha
Helix 10
AB1
A
189 197Right-handed alpha
Helix 11
AB2
A
213 217Right-handed alpha
Helix 12
AB3
A
221 238Right-handed alpha
Helix 13
AB4
A
250 264Right-handed alpha
Helix 14
AB5
A
294 299Right-handed alpha
Helix 15
AB6
A
302 309Right-handed 310
Helix 16
AB7
B
-11 -2Right-handed alpha
Helix 17
AB8
B
5 9Right-handed 310
Helix 18
AB9
B
12 20Right-handed alpha
Helix 19
AC1
B
21 25Right-handed 310
Helix 20
AC2
B
41 58Right-handed alpha
Helix 21
AC3
B
71 94Right-handed alpha
Helix 22
AC4
B
112 122Right-handed alpha
Helix 23
AC5
B
133 147Right-handed alpha
Helix 24
AC6
B
165 171Right-handed alpha
Helix 25
AC7
B
189 196Right-handed alpha
Helix 26
AC8
B
213 217Right-handed alpha
Helix 27
AC9
B
221 238Right-handed alpha
Helix 28
AD1
B
250 264Right-handed alpha
Helix 29
AD2
B
294 299Right-handed alpha
Helix 30
AD3
B
302 309Right-handed 310
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There are 6 sheets in PDB entry 8PB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
35 37anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 157first strand
Strand 2
A
125 131parallel
Strand 3
A
101 106parallel
Strand 4
A
177 182parallel
Strand 5
A
241 248parallel
Strand 6
A
279 286anti-parallel
Strand 7
A
269 276anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
218 219parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
35 37anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 157first strand
Strand 2
B
125 131parallel
Strand 3
B
101 106parallel
Strand 4
B
177 182parallel
Strand 5
B
241 248parallel
Strand 6
B
279 287anti-parallel
Strand 7
B
268 276anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
218 219parallel
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