Analysis of interatomic Contacts of Structural Units in PDB entry:
8PB9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PB9 entry

There are 5 chains in PDB entry 8PB9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 GLU 4VAL 393
A
 HIS 8GLN 272
B
 HIS 8GLN 272
C
 LEU 142VAL 393
E
 ARG 3ASP 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 8PB9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
13 28Right-handed alpha
Helix 2
AA2
D
38 44Right-handed alpha
Helix 3
AA3
D
48 50Right-handed 310
Helix 4
AA4
D
64 77Right-handed alpha
Helix 5
AA5
D
94 100Right-handed alpha
Helix 6
AA6
D
110 129Right-handed alpha
Helix 7
AA7
D
150 164Right-handed alpha
Helix 8
AA8
D
179 190Right-handed alpha
Helix 9
AA9
D
210 216Right-handed alpha
Helix 10
AB1
D
232 237Right-handed alpha
Helix 11
AB2
D
247 250Right-handed 310
Helix 12
AB3
D
251 265Right-handed alpha
Helix 13
AB4
D
289 297Right-handed alpha
Helix 14
AB5
D
300 308Right-handed alpha
Helix 15
AB6
D
316 322Right-handed 310
Helix 16
AB7
D
323 338Right-handed alpha
Helix 17
AB8
D
346 354Right-handed alpha
Helix 18
AB9
D
361 376Right-handed alpha
Helix 19
AC1
A
23 38Right-handed alpha
Helix 20
AC2
A
53 59Right-handed alpha
Helix 21
AC3
A
65 71Right-handed alpha
Helix 22
AC4
A
75 80Right-handed 310
Helix 23
AC5
A
84 86Right-handed 310
Helix 24
AC6
A
96 100Right-handed 310
Helix 25
AC7
A
103 114Right-handed alpha
Helix 26
AC8
A
115 117Right-handed 310
Helix 27
AC9
A
133 143Right-handed alpha
Helix 28
AD1
A
153 172Right-handed alpha
Helix 29
AD2
A
185 204Right-handed alpha
Helix 30
AD3
A
217 226Right-handed alpha
Helix 31
AD4
A
229 234Right-handed alpha
Helix 32
AD5
A
237 252Right-handed alpha
Helix 33
AD6
A
266 272Right-handed alpha
Helix 34
AD7
B
23 39Right-handed alpha
Helix 35
AD8
B
53 58Right-handed alpha
Helix 36
AD9
B
65 71Right-handed alpha
Helix 37
AE1
B
96 101Right-handed alpha
Helix 38
AE2
B
103 115Right-handed alpha
Helix 39
AE3
B
133 142Right-handed alpha
Helix 40
AE4
B
153 170Right-handed alpha
Helix 41
AE5
B
185 204Right-handed alpha
Helix 42
AE6
B
217 226Right-handed alpha
Helix 43
AE7
B
229 234Right-handed alpha
Helix 44
AE8
B
237 252Right-handed alpha
Helix 45
AE9
B
266 272Right-handed alpha
Helix 46
AF1
C
150 164Right-handed alpha
Helix 47
AF2
C
179 190Right-handed alpha
Helix 48
AF3
C
204 206Right-handed 310
Helix 49
AF4
C
207 209Right-handed 310
Helix 50
AF5
C
210 216Right-handed alpha
Helix 51
AF6
C
232 237Right-handed alpha
Helix 52
AF7
C
251 265Right-handed alpha
Helix 53
AF8
C
289 296Right-handed alpha
Helix 54
AF9
C
300 308Right-handed alpha
Helix 55
AG1
C
316 322Right-handed 310
Helix 56
AG2
C
323 339Right-handed alpha
Helix 57
AG3
C
346 356Right-handed alpha
Helix 58
AG4
C
360 376Right-handed alpha
Helix 59
AG5
E
13 27Right-handed alpha
Helix 60
AG6
E
38 45Right-handed alpha
Helix 61
AG7
E
48 50Right-handed 310
Helix 62
AG8
E
66 77Right-handed alpha
Helix 63
AG9
E
94 99Right-handed alpha
Helix 64
AH1
E
110 129Right-handed alpha
Helix 65
AH2
E
150 165Right-handed alpha
Helix 66
AH3
E
179 190Right-handed alpha
Helix 67
AH4
E
207 217Right-handed alpha
Helix 68
AH5
E
247 250Right-handed 310
Helix 69
AH6
E
251 265Right-handed alpha
Helix 70
AH7
E
289 297Right-handed alpha
Helix 71
AH8
E
300 308Right-handed alpha
Helix 72
AH9
E
316 321Right-handed 310
Helix 73
AI1
E
322 339Right-handed alpha
Helix 74
AI2
E
346 355Right-handed alpha
Helix 75
AI3
E
360 376Right-handed alpha
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There are 14 sheets in PDB entry 8PB9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 34first strand
Strand 2
D
6 10parallel
Strand 3
D
52 55parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
82 85first strand
Strand 2
D
101 105parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
136 137first strand
Strand 2
B
255 256parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
198 202first strand
Strand 2
D
241 245parallel
Strand 3
D
281 286parallel
Strand 4
D
170 173parallel
Strand 5
D
311 313parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
266 268first strand
Strand 2
D
275 277anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
125 127parallel
Strand 3
A
13 16parallel
Strand 4
A
145 150parallel
Strand 5
A
175 183parallel
Strand 6
A
207 215parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
88 89anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
87 90anti-parallel
Strand 3
B
42 45parallel
Strand 4
B
123 127parallel
Strand 5
B
11 16parallel
Strand 6
B
145 151parallel
Strand 7
B
175 183parallel
Strand 8
B
207 215parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
198 202first strand
Strand 2
C
241 245parallel
Strand 3
C
281 285parallel
Strand 4
C
170 173parallel
Strand 5
C
311 313parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
217 218first strand
Strand 2
C
230 231anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
31 34first strand
Strand 2
E
6 10parallel
Strand 3
E
52 57parallel
Strand 4
E
82 84parallel
Strand 5
E
101 104parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
198 202first strand
Strand 2
E
241 245parallel
Strand 3
E
281 286parallel
Strand 4
E
170 173parallel
Strand 5
E
311 313parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
266 268first strand
Strand 2
E
275 277anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
344 345first strand
Strand 2
E
380 381parallel
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