Analysis of interatomic Contacts of Structural Units in PDB entry:
8PBA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PBA entry

There are 2 chains in PDB entry 8PBA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 34	GLY 918
B	GLU 34	GLY 918

There are 39 helices in PDB entry 8PBA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	60	Right-handed alpha
Helix 2	AA2	A	61	63	Right-handed 310
Helix 3	AA3	A	102	108	Right-handed alpha
Helix 4	AA4	A	301	307	Right-handed alpha
Helix 5	AA5	A	380	385	Right-handed alpha
Helix 6	AA6	A	400	402	Right-handed 310
Helix 7	AA7	A	425	427	Right-handed 310
Helix 8	AA8	A	712	716	Right-handed 310
Helix 9	AA9	A	717	722	Right-handed alpha
Helix 10	AB1	A	739	744	Right-handed alpha
Helix 11	AB2	A	745	747	Right-handed 310
Helix 12	AB3	A	753	769	Right-handed alpha
Helix 13	AB4	A	784	797	Right-handed alpha
Helix 14	AB5	A	812	816	Right-handed 310
Helix 15	AB6	A	817	826	Right-handed alpha
Helix 16	AB7	A	830	837	Right-handed alpha
Helix 17	AB8	A	839	846	Right-handed 310
Helix 18	AB9	A	865	880	Right-handed alpha
Helix 19	AC1	A	897	917	Right-handed alpha
Helix 20	AC2	B	44	60	Right-handed alpha
Helix 21	AC3	B	61	63	Right-handed 310
Helix 22	AC4	B	102	107	Right-handed alpha
Helix 23	AC5	B	301	307	Right-handed alpha
Helix 24	AC6	B	380	385	Right-handed alpha
Helix 25	AC7	B	400	402	Right-handed 310
Helix 26	AC8	B	425	427	Right-handed 310
Helix 27	AC9	B	430	434	Right-handed 310
Helix 28	AD1	B	712	716	Right-handed 310
Helix 29	AD2	B	717	722	Right-handed alpha
Helix 30	AD3	B	739	744	Right-handed alpha
Helix 31	AD4	B	745	747	Right-handed 310
Helix 32	AD5	B	753	769	Right-handed alpha
Helix 33	AD6	B	784	797	Right-handed alpha
Helix 34	AD7	B	812	816	Right-handed 310
Helix 35	AD8	B	817	826	Right-handed alpha
Helix 36	AD9	B	830	837	Right-handed alpha
Helix 37	AE1	B	839	846	Right-handed 310
Helix 38	AE2	B	865	880	Right-handed alpha
Helix 39	AE3	B	897	917	Right-handed alpha

There are 24 sheets in PDB entry 8PBA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	37	first strand
Strand 2	A	691	699	parallel
Strand 3	A	726	730	parallel
Strand 4	A	676	682	anti-parallel
Strand 5	A	664	669	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	37	first strand
Strand 2	A	691	699	parallel
Strand 3	A	773	783	parallel
Strand 4	A	803	807	parallel
Strand 5	A	853	858	parallel
Strand 6	A	884	888	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	76	first strand
Strand 2	A	79	87	anti-parallel
Strand 3	A	94	101	anti-parallel
Strand 4	A	116	122	anti-parallel
Strand 5	A	640	649	parallel
Strand 6	A	621	631	anti-parallel
Strand 7	A	611	618	anti-parallel
Strand 8	A	594	596	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	76	first strand
Strand 2	A	79	87	anti-parallel
Strand 3	A	94	101	anti-parallel
Strand 4	A	116	122	anti-parallel
Strand 5	A	640	649	parallel
Strand 6	A	621	631	anti-parallel
Strand 7	A	611	618	anti-parallel
Strand 8	A	605	607	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	260	first strand
Strand 2	A	267	272	anti-parallel
Strand 3	A	275	280	anti-parallel
Strand 4	A	283	287	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	297	first strand
Strand 2	A	322	329	anti-parallel
Strand 3	A	314	316	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	297	first strand
Strand 2	A	322	329	anti-parallel
Strand 3	A	360	369	anti-parallel
Strand 4	A	372	377	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	336	first strand
Strand 2	A	349	350	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	398	first strand
Strand 2	A	404	411	anti-parallel
Strand 3	A	416	423	anti-parallel
Strand 4	A	474	480	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	493	first strand
Strand 2	A	504	511	anti-parallel
Strand 3	A	516	525	anti-parallel
Strand 4	A	531	534	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	493	first strand
Strand 2	A	504	511	anti-parallel
Strand 3	A	516	525	anti-parallel
Strand 4	A	537	538	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	553	554	first strand
Strand 2	A	560	569	anti-parallel
Strand 3	A	572	579	anti-parallel
Strand 4	A	585	587	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	37	first strand
Strand 2	B	691	699	parallel
Strand 3	B	726	730	parallel
Strand 4	B	676	682	anti-parallel
Strand 5	B	664	669	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	37	first strand
Strand 2	B	691	699	parallel
Strand 3	B	773	783	parallel
Strand 4	B	803	807	parallel
Strand 5	B	853	858	parallel
Strand 6	B	884	888	parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	76	first strand
Strand 2	B	79	87	anti-parallel
Strand 3	B	94	101	anti-parallel
Strand 4	B	116	122	anti-parallel
Strand 5	B	640	649	parallel
Strand 6	B	621	631	anti-parallel
Strand 7	B	611	618	anti-parallel
Strand 8	B	594	596	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	76	first strand
Strand 2	B	79	87	anti-parallel
Strand 3	B	94	101	anti-parallel
Strand 4	B	116	122	anti-parallel
Strand 5	B	640	649	parallel
Strand 6	B	621	631	anti-parallel
Strand 7	B	611	618	anti-parallel
Strand 8	B	605	607	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	260	first strand
Strand 2	B	267	272	anti-parallel
Strand 3	B	275	280	anti-parallel
Strand 4	B	283	287	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	297	first strand
Strand 2	B	322	329	anti-parallel
Strand 3	B	314	316	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	297	first strand
Strand 2	B	322	329	anti-parallel
Strand 3	B	360	369	anti-parallel
Strand 4	B	372	377	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	336	first strand
Strand 2	B	349	350	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	398	first strand
Strand 2	B	404	411	anti-parallel
Strand 3	B	416	423	anti-parallel
Strand 4	B	474	480	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	493	first strand
Strand 2	B	504	511	anti-parallel
Strand 3	B	516	525	anti-parallel
Strand 4	B	531	534	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	493	first strand
Strand 2	B	504	511	anti-parallel
Strand 3	B	516	525	anti-parallel
Strand 4	B	537	538	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	553	554	first strand
Strand 2	B	560	569	anti-parallel
Strand 3	B	572	579	anti-parallel
Strand 4	B	585	587	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PBA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PBA