Analysis of interatomic Contacts of Structural Units in PDB entry:
8PBB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PBB entry

There are 4 chains in PDB entry 8PBB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 54	ARG 519
B	VAL 5	TRP 460
C	ALA 54	ARG 519
D	VAL 5	TRP 460

There are 78 helices in PDB entry 8PBB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	72	79	Right-handed alpha
Helix 2	AA2	A	91	96	Right-handed alpha
Helix 3	AA3	A	114	126	Right-handed alpha
Helix 4	AA4	A	138	142	Right-handed 310
Helix 5	AA5	A	147	159	Right-handed alpha
Helix 6	AA6	A	182	191	Right-handed alpha
Helix 7	AA7	A	215	226	Right-handed alpha
Helix 8	AA8	A	240	246	Right-handed alpha
Helix 9	AA9	A	247	250	Right-handed 310
Helix 10	AB1	A	261	273	Right-handed alpha
Helix 11	AB2	A	284	299	Right-handed alpha
Helix 12	AB3	A	300	326	Right-handed alpha
Helix 13	AB4	A	343	352	Right-handed alpha
Helix 14	AB5	A	405	414	Right-handed alpha
Helix 15	AB6	A	432	448	Right-handed alpha
Helix 16	AB7	A	449	456	Right-handed alpha
Helix 17	AB8	A	472	479	Right-handed alpha
Helix 18	AB9	A	482	487	Right-handed alpha
Helix 19	AC1	A	500	519	Right-handed alpha
Helix 20	AC2	B	20	30	Right-handed alpha
Helix 21	AC3	B	42	58	Right-handed alpha
Helix 22	AC4	B	78	92	Right-handed alpha
Helix 23	AC5	B	113	129	Right-handed alpha
Helix 24	AC6	B	147	164	Right-handed alpha
Helix 25	AC7	B	181	195	Right-handed alpha
Helix 26	AC8	B	205	209	Right-handed 310
Helix 27	AC9	B	225	232	Right-handed alpha
Helix 28	AD1	B	233	235	Right-handed 310
Helix 29	AD2	B	246	258	Right-handed alpha
Helix 30	AD3	B	269	285	Right-handed alpha
Helix 31	AD4	B	289	311	Right-handed alpha
Helix 32	AD5	B	321	335	Right-handed alpha
Helix 33	AD6	B	354	364	Right-handed alpha
Helix 34	AD7	B	374	384	Right-handed alpha
Helix 35	AD8	B	394	396	Right-handed 310
Helix 36	AD9	B	397	405	Right-handed alpha
Helix 37	AE1	B	420	424	Right-handed 310
Helix 38	AE2	B	427	451	Right-handed alpha
Helix 39	AE3	B	453	457	Right-handed 310
Helix 40	AE4	C	72	79	Right-handed alpha
Helix 41	AE5	C	91	96	Right-handed alpha
Helix 42	AE6	C	114	126	Right-handed alpha
Helix 43	AE7	C	138	142	Right-handed 310
Helix 44	AE8	C	147	159	Right-handed alpha
Helix 45	AE9	C	182	189	Right-handed alpha
Helix 46	AF1	C	215	226	Right-handed alpha
Helix 47	AF2	C	240	246	Right-handed alpha
Helix 48	AF3	C	247	250	Right-handed 310
Helix 49	AF4	C	261	273	Right-handed alpha
Helix 50	AF5	C	284	299	Right-handed alpha
Helix 51	AF6	C	300	326	Right-handed alpha
Helix 52	AF7	C	343	352	Right-handed alpha
Helix 53	AF8	C	405	414	Right-handed alpha
Helix 54	AF9	C	432	448	Right-handed alpha
Helix 55	AG1	C	449	456	Right-handed alpha
Helix 56	AG2	C	472	479	Right-handed alpha
Helix 57	AG3	C	482	487	Right-handed alpha
Helix 58	AG4	C	500	519	Right-handed alpha
Helix 59	AG5	D	20	30	Right-handed alpha
Helix 60	AG6	D	42	58	Right-handed alpha
Helix 61	AG7	D	78	92	Right-handed alpha
Helix 62	AG8	D	113	129	Right-handed alpha
Helix 63	AG9	D	147	164	Right-handed alpha
Helix 64	AH1	D	181	195	Right-handed alpha
Helix 65	AH2	D	205	209	Right-handed 310
Helix 66	AH3	D	225	232	Right-handed alpha
Helix 67	AH4	D	233	235	Right-handed 310
Helix 68	AH5	D	246	258	Right-handed alpha
Helix 69	AH6	D	268	285	Right-handed alpha
Helix 70	AH7	D	289	311	Right-handed alpha
Helix 71	AH8	D	321	335	Right-handed alpha
Helix 72	AH9	D	354	364	Right-handed alpha
Helix 73	AI1	D	374	384	Right-handed alpha
Helix 74	AI2	D	394	396	Right-handed 310
Helix 75	AI3	D	397	405	Right-handed alpha
Helix 76	AI4	D	420	424	Right-handed 310
Helix 77	AI5	D	427	451	Right-handed alpha
Helix 78	AI6	D	453	457	Right-handed 310

There are 12 sheets in PDB entry 8PBB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	165	first strand
Strand 2	A	131	136	parallel
Strand 3	A	65	70	parallel
Strand 4	A	98	99	parallel
Strand 5	B	13	14	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	236	first strand
Strand 2	A	204	210	parallel
Strand 3	A	252	255	parallel
Strand 4	A	276	278	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	355	first strand
Strand 2	A	330	333	parallel
Strand 3	A	401	404	parallel
Strand 4	A	419	421	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	368	371	parallel
Strand 3	B	338	344	parallel
Strand 4	B	315	319	parallel
Strand 5	B	390	393	parallel
Strand 6	B	408	410	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	38	40	parallel
Strand 3	B	97	102	parallel
Strand 4	B	135	139	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	202	first strand
Strand 2	B	173	176	parallel
Strand 3	B	238	240	parallel
Strand 4	B	261	263	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	166	first strand
Strand 2	C	131	136	parallel
Strand 3	C	65	70	parallel
Strand 4	C	98	99	parallel
Strand 5	D	13	14	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	236	first strand
Strand 2	C	204	210	parallel
Strand 3	C	252	255	parallel
Strand 4	C	276	278	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	330	333	parallel
Strand 3	C	401	404	parallel
Strand 4	C	419	421	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	D	368	371	parallel
Strand 3	D	338	344	parallel
Strand 4	D	315	319	parallel
Strand 5	D	390	393	parallel
Strand 6	D	408	410	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	65	first strand
Strand 2	D	38	40	parallel
Strand 3	D	97	102	parallel
Strand 4	D	135	139	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	202	first strand
Strand 2	D	173	176	parallel
Strand 3	D	238	240	parallel
Strand 4	D	261	263	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PBB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PBB