Analysis of interatomic Contacts of Structural Units in PDB entry:
8PBL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PBL entry

There are 9 chains in PDB entry 8PBL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	A 3	A 30
B	T 1	A 13
B	C 16	T 28
D	GLU 7	ARG 235
E	SER 4	ASP 233
F	VAL 2	GLU 1342
G	GLU 16	ARG 1373
H	ALA 2	GLU 74
R	A 7	A 20

There are 99 helices in PDB entry 8PBL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	34	51	Right-handed alpha
Helix 2	AA2	D	77	87	Right-handed alpha
Helix 3	AA3	D	113	115	Right-handed 310
Helix 4	AA4	D	212	233	Right-handed alpha
Helix 5	AA5	E	34	50	Right-handed alpha
Helix 6	AA6	E	77	87	Right-handed alpha
Helix 7	AA7	E	212	228	Right-handed alpha
Helix 8	AA8	E	229	232	Right-handed 310
Helix 9	AA9	F	28	40	Right-handed alpha
Helix 10	AB1	F	47	57	Right-handed alpha
Helix 11	AB2	F	81	89	Right-handed alpha
Helix 12	AB3	F	206	213	Right-handed alpha
Helix 13	AB4	F	216	225	Right-handed alpha
Helix 14	AB5	F	270	276	Right-handed alpha
Helix 15	AB6	F	288	294	Right-handed alpha
Helix 16	AB7	F	318	328	Right-handed alpha
Helix 17	AB8	F	345	354	Right-handed alpha
Helix 18	AB9	F	358	371	Right-handed alpha
Helix 19	AC1	F	377	390	Right-handed alpha
Helix 20	AC2	F	398	409	Right-handed alpha
Helix 21	AC3	F	421	437	Right-handed alpha
Helix 22	AC4	F	455	482	Right-handed alpha
Helix 23	AC5	F	495	509	Right-handed alpha
Helix 24	AC6	F	519	528	Right-handed alpha
Helix 25	AC7	F	551	555	Right-handed 310
Helix 26	AC8	F	609	614	Right-handed 310
Helix 27	AC9	F	670	674	Right-handed 310
Helix 28	AD1	F	675	687	Right-handed alpha
Helix 29	AD2	F	704	712	Right-handed alpha
Helix 30	AD3	F	738	741	Right-handed 310
Helix 31	AD4	F	820	826	Right-handed alpha
Helix 32	AD5	F	858	864	Right-handed alpha
Helix 33	AD6	F	942	981	Right-handed alpha
Helix 34	AD7	F	985	989	Right-handed 310
Helix 35	AD8	F	1008	1016	Right-handed alpha
Helix 36	AD9	F	1017	1037	Right-handed alpha
Helix 37	AE1	F	1101	1107	Right-handed alpha
Helix 38	AE2	F	1109	1134	Right-handed alpha
Helix 39	AE3	F	1137	1150	Right-handed alpha
Helix 40	AE4	F	1165	1176	Right-handed alpha
Helix 41	AE5	F	1191	1202	Right-handed alpha
Helix 42	AE6	F	1238	1243	Right-handed alpha
Helix 43	AE7	F	1271	1282	Right-handed alpha
Helix 44	AE8	F	1283	1293	Right-handed alpha
Helix 45	AE9	F	1299	1310	Right-handed alpha
Helix 46	AF1	F	1320	1332	Right-handed alpha
Helix 47	AF2	G	26	33	Right-handed alpha
Helix 48	AF3	G	58	63	Right-handed alpha
Helix 49	AF4	G	94	100	Right-handed 310
Helix 50	AF5	G	114	119	Right-handed alpha
Helix 51	AF6	G	122	128	Right-handed alpha
Helix 52	AF7	G	131	140	Right-handed alpha
Helix 53	AF8	G	161	172	Right-handed alpha
Helix 54	AF9	G	181	192	Right-handed alpha
Helix 55	AG1	G	193	207	Right-handed alpha
Helix 56	AG2	G	210	231	Right-handed alpha
Helix 57	AG3	G	233	236	Right-handed 310
Helix 58	AG4	G	246	250	Right-handed 310
Helix 59	AG5	G	263	285	Right-handed alpha
Helix 60	AG6	G	288	308	Right-handed alpha
Helix 61	AG7	G	336	342	Right-handed alpha
Helix 62	AG8	G	369	377	Right-handed alpha
Helix 63	AG9	G	377	388	Right-handed alpha
Helix 64	AH1	G	393	404	Right-handed alpha
Helix 65	AH2	G	405	417	Right-handed alpha
Helix 66	AH3	G	430	432	Right-handed 310
Helix 67	AH4	G	450	452	Right-handed 310
Helix 68	AH5	G	453	458	Right-handed alpha
Helix 69	AH6	G	473	483	Right-handed alpha
Helix 70	AH7	G	504	513	Right-handed alpha
Helix 71	AH8	G	529	539	Right-handed alpha
Helix 72	AH9	G	574	580	Right-handed alpha
Helix 73	AI1	G	588	592	Right-handed 310
Helix 74	AI2	G	597	612	Right-handed alpha
Helix 75	AI3	G	613	636	Right-handed alpha
Helix 76	AI4	G	649	670	Right-handed alpha
Helix 77	AI5	G	674	699	Right-handed alpha
Helix 78	AI6	G	720	729	Right-handed alpha
Helix 79	AI7	G	733	742	Right-handed alpha
Helix 80	AI8	G	768	805	Right-handed alpha
Helix 81	AI9	G	834	840	Right-handed alpha
Helix 82	AJ1	G	865	876	Right-handed alpha
Helix 83	AJ2	G	914	925	Right-handed alpha
Helix 84	AJ3	G	926	930	Right-handed 310
Helix 85	AJ4	G	1137	1146	Right-handed alpha
Helix 86	AJ5	G	1217	1224	Right-handed alpha
Helix 87	AJ6	G	1225	1244	Right-handed alpha
Helix 88	AJ7	G	1249	1260	Right-handed alpha
Helix 89	AJ8	G	1282	1296	Right-handed alpha
Helix 90	AJ9	G	1308	1315	Right-handed alpha
Helix 91	AK1	G	1318	1326	Right-handed alpha
Helix 92	AK2	G	1327	1339	Right-handed alpha
Helix 93	AK3	G	1347	1353	Right-handed alpha
Helix 94	AK4	G	1359	1361	Right-handed 310
Helix 95	AK5	G	1362	1373	Right-handed alpha
Helix 96	AK6	H	9	14	Right-handed alpha
Helix 97	AK7	H	15	33	Right-handed alpha
Helix 98	AK8	H	45	57	Right-handed alpha
Helix 99	AK9	H	60	74	Right-handed alpha

There are 45 sheets in PDB entry 8PBL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	20	first strand
Strand 2	D	23	31	anti-parallel
Strand 3	D	199	207	anti-parallel
Strand 4	D	180	189	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	105	first strand
Strand 2	D	139	150	anti-parallel
Strand 3	D	52	61	anti-parallel
Strand 4	D	171	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	92	first strand
Strand 2	D	121	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	111	first strand
Strand 2	D	129	133	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	153	first strand
Strand 2	D	175	176	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	18	first strand
Strand 2	E	24	31	anti-parallel
Strand 3	E	198	207	anti-parallel
Strand 4	E	180	190	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	101	first strand
Strand 2	E	143	150	anti-parallel
Strand 3	E	52	59	anti-parallel
Strand 4	E	171	172	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	92	first strand
Strand 2	E	121	123	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	14	first strand
Strand 2	F	1182	1183	parallel
Strand 3	F	700	701	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	60	first strand
Strand 2	F	66	75	anti-parallel
Strand 3	F	93	105	anti-parallel
Strand 4	F	114	128	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	136	138	first strand
Strand 2	F	141	145	anti-parallel
Strand 3	F	512	514	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	451	454	first strand
Strand 2	F	147	151	anti-parallel
Strand 3	F	529	531	parallel
Strand 4	F	572	574	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	154	158	first strand
Strand 2	F	173	177	anti-parallel
Strand 3	F	185	186	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	195	196	first strand
Strand 2	F	204	205	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	227	228	first strand
Strand 2	F	335	336	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	238	240	first strand
Strand 2	F	284	286	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	256	257	first strand
Strand 2	F	260	261	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	580	581	first strand
Strand 2	F	587	595	anti-parallel
Strand 3	F	598	607	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	580	581	first strand
Strand 2	F	587	595	anti-parallel
Strand 3	F	652	654	anti-parallel
Strand 4	F	616	617	parallel
Strand 5	F	634	637	anti-parallel
Strand 6	F	642	645	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	716	717	first strand
Strand 2	F	782	785	anti-parallel
Strand 3	F	768	769	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	748	752	first strand
Strand 2	F	731	736	anti-parallel
Strand 3	F	722	727	anti-parallel
Strand 4	F	776	777	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	757	758	first strand
Strand 2	F	764	765	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	789	790	first strand
Strand 2	F	793	794	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1209	1210	first strand
Strand 2	F	1225	1234	anti-parallel
Strand 3	F	1065	1067	anti-parallel
Strand 4	F	1074	1080	anti-parallel
Strand 5	F	816	819	parallel
Strand 6	F	1096	1098	anti-parallel
Strand 7	F	798	804	parallel
Strand 8	F	1225	1234	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	830	840	first strand
Strand 2	F	1048	1058	anti-parallel
Strand 3	F	926	935	anti-parallel
Strand 4	F	876	877	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	882	884	first strand
Strand 2	F	918	919	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	887	888	first strand
Strand 2	F	914	915	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1244	1245	first strand
Strand 2	G	350	357	anti-parallel
Strand 3	G	465	469	anti-parallel
Strand 4	G	421	424	anti-parallel
Strand 5	G	434	439	anti-parallel
Strand 6	G	365	366	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1244	1245	first strand
Strand 2	G	350	357	anti-parallel
Strand 3	G	447	449	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1268	1270	first strand
Strand 2	G	345	347	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1336	1339	first strand
Strand 2	G	19	23	anti-parallel
Strand 3	G	1341	1343	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	34	37	first strand
Strand 2	G	102	112	parallel
Strand 3	G	238	244	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	145	148	first strand
Strand 2	G	177	179	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	526	527	first strand
Strand 2	G	547	558	parallel
Strand 3	G	562	573	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	747	748	first strand
Strand 2	G	754	755	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	809	811	first strand
Strand 2	G	894	895	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	820	822	first strand
Strand 2	G	880	882	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	848	849	first strand
Strand 2	G	856	858	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	981	985	first strand
Strand 2	G	991	996	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1002	1003	first strand
Strand 2	G	1018	1019	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1035	1036	first strand
Strand 2	G	1079	1080	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1046	1048	first strand
Strand 2	G	1059	1061	anti-parallel
Strand 3	G	1105	1107	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1155	1156	first strand
Strand 2	G	1209	1211	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1161	1162	first strand
Strand 2	G	1203	1204	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1279	1281	first strand
Strand 2	G	1263	1266	anti-parallel
Strand 3	G	1302	1304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PBL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PBL