Analysis of interatomic Contacts of Structural Units in PDB entry:
8PBX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PBX entry

There is 1 chain in PDB entry 8PBX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 27	LEU 695

There are 72 helices in PDB entry 8PBX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	58	Right-handed alpha
Helix 2	AA2	A	101	104	Right-handed 310
Helix 3	AA3	A	138	148	Right-handed alpha
Helix 4	AA4	A	159	164	Right-handed alpha
Helix 5	AA5	A	170	176	Right-handed alpha
Helix 6	AA6	A	183	188	Right-handed alpha
Helix 7	AA7	A	236	243	Right-handed alpha
Helix 8	AA8	A	243	252	Right-handed alpha
Helix 9	AA9	A	271	278	Right-handed alpha
Helix 10	AB1	A	289	299	Right-handed alpha
Helix 11	AB2	A	349	358	Right-handed alpha
Helix 12	AB3	A	438	445	Right-handed alpha
Helix 13	AB4	A	490	495	Right-handed 310
Helix 14	AB5	A	513	522	Right-handed alpha
Helix 15	AB6	A	548	561	Right-handed alpha
Helix 16	AB7	A	581	585	Right-handed 310
Helix 17	AB8	A	596	600	Right-handed 310
Helix 18	AB9	A	601	606	Right-handed alpha
Helix 19	AC1	A	687	692	Right-handed alpha
Helix 20	AC2	A	694	696	Right-handed 310
Helix 21	AC3	A	717	719	Right-handed 310
Helix 22	AC4	A	750	754	Right-handed 310
Helix 23	AC5	A	812	821	Right-handed alpha
Helix 24	AC6	A	847	852	Right-handed alpha
Helix 25	AC7	A	858	864	Right-handed alpha
Helix 26	AC8	A	865	870	Right-handed alpha
Helix 27	AC9	B	99	103	Right-handed 310
Helix 28	AD1	B	110	126	Right-handed alpha
Helix 29	AD2	B	179	184	Right-handed alpha
Helix 30	AD3	B	208	213	Right-handed alpha
Helix 31	AD4	B	251	255	Right-handed 310
Helix 32	AD5	B	295	297	Right-handed 310
Helix 33	AD6	B	312	317	Right-handed alpha
Helix 34	AD7	B	326	333	Right-handed alpha
Helix 35	AD8	B	334	337	Right-handed 310
Helix 36	AD9	B	363	368	Right-handed alpha
Helix 37	AE1	B	369	370	Right-handed 310
Helix 38	AE2	B	371	376	Right-handed 310
Helix 39	AE3	B	383	394	Right-handed alpha
Helix 40	AE4	B	405	409	Right-handed 310
Helix 41	AE5	B	411	416	Right-handed 310
Helix 42	AE6	B	446	453	Right-handed alpha
Helix 43	AE7	B	505	510	Right-handed alpha
Helix 44	AE8	B	574	583	Right-handed alpha
Helix 45	AE9	B	604	608	Right-handed 310
Helix 46	AF1	B	625	629	Right-handed 310
Helix 47	AF2	B	633	641	Right-handed alpha
Helix 48	AF3	B	661	670	Right-handed alpha
Helix 49	AF4	B	699	706	Right-handed alpha
Helix 50	AF5	B	721	727	Right-handed alpha
Helix 51	AF6	B	739	745	Right-handed 310
Helix 52	AF7	B	758	768	Right-handed alpha
Helix 53	AF8	B	808	810	Right-handed 310
Helix 54	AF9	B	838	842	Right-handed 310
Helix 55	AG1	B	903	917	Right-handed alpha
Helix 56	AG2	B	940	944	Right-handed 310
Helix 57	AG3	B	946	950	Right-handed 310
Helix 58	AG4	B	961	970	Right-handed alpha
Helix 59	AG5	B	1051	1056	Right-handed alpha
Helix 60	AG6	B	1059	1062	Right-handed 310
Helix 61	AG7	B	1130	1136	Right-handed 310
Helix 62	AG8	B	1137	1142	Right-handed alpha
Helix 63	AG9	B	1145	1154	Right-handed alpha
Helix 64	AH1	B	1157	1161	Right-handed 310
Helix 65	AH2	B	1192	1203	Right-handed alpha
Helix 66	AH3	B	1204	1211	Right-handed 310
Helix 67	AH4	B	1245	1249	Right-handed 310
Helix 68	AH5	B	1255	1259	Right-handed 310
Helix 69	AH6	B	1260	1266	Right-handed alpha
Helix 70	AH7	B	1268	1273	Right-handed alpha
Helix 71	AH8	B	1281	1287	Right-handed 310
Helix 72	AH9	B	1296	1298	Right-handed 310

There are 37 sheets in PDB entry 8PBX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	36	40	anti-parallel
Strand 3	A	52	53	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	71	first strand
Strand 2	A	76	82	anti-parallel
Strand 3	A	110	115	anti-parallel
Strand 4	A	125	131	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	97	99	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	215	first strand
Strand 2	A	149	151	anti-parallel
Strand 3	A	501	502	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	225	first strand
Strand 2	A	268	270	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	286	287	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	304	first strand
Strand 2	A	308	312	anti-parallel
Strand 3	A	321	326	anti-parallel
Strand 4	A	337	339	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	345	first strand
Strand 2	A	568	570	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	391	first strand
Strand 2	A	394	401	anti-parallel
Strand 3	A	541	547	anti-parallel
Strand 4	A	573	577	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	425	first strand
Strand 2	A	406	408	anti-parallel
Strand 3	A	498	499	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	459	first strand
Strand 2	A	462	463	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	477	478	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	626	633	first strand
Strand 2	A	646	652	anti-parallel
Strand 3	A	655	659	anti-parallel
Strand 4	A	681	685	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	698	704	first strand
Strand 2	A	709	715	anti-parallel
Strand 3	A	735	741	anti-parallel
Strand 4	A	764	771	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	775	780	first strand
Strand 2	A	786	792	anti-parallel
Strand 3	A	797	805	anti-parallel
Strand 4	A	808	811	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	840	843	first strand
Strand 2	A	873	876	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	884	892	first strand
Strand 2	A	895	903	anti-parallel
Strand 3	A	909	910	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	884	892	first strand
Strand 2	A	895	903	anti-parallel
Strand 3	A	928	931	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	915	916	first strand
Strand 2	A	919	920	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	80	first strand
Strand 2	B	86	92	anti-parallel
Strand 3	B	128	133	anti-parallel
Strand 4	B	139	141	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	165	first strand
Strand 2	B	169	170	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	193	first strand
Strand 2	B	200	206	anti-parallel
Strand 3	B	339	345	anti-parallel
Strand 4	B	353	360	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	247	first strand
Strand 2	B	300	301	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	271	first strand
Strand 2	B	867	869	anti-parallel
Strand 3	B	876	877	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	279	first strand
Strand 2	B	651	653	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	282	first strand
Strand 2	B	292	293	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	460	first strand
Strand 2	B	463	466	anti-parallel
Strand 3	B	485	492	anti-parallel
Strand 4	B	497	504	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	537	545	first strand
Strand 2	B	548	555	anti-parallel
Strand 3	B	692	698	anti-parallel
Strand 4	B	747	751	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	804	806	first strand
Strand 2	B	827	829	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	845	846	first strand
Strand 2	B	882	883	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	921	923	first strand
Strand 2	B	993	998	anti-parallel
Strand 3	B	1110	1112	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1009	1014	first strand
Strand 2	B	1020	1024	anti-parallel
Strand 3	B	1027	1031	anti-parallel
Strand 4	B	1045	1048	anti-parallel
Strand 5	B	1213	1215	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1064	1069	first strand
Strand 2	B	1075	1079	anti-parallel
Strand 3	B	1168	1171	anti-parallel
Strand 4	B	1217	1220	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1228	1230	first strand
Strand 2	B	1235	1237	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1252	1253	first strand
Strand 2	B	1289	1290	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1300	1307	first strand
Strand 2	B	1314	1321	anti-parallel
Strand 3	B	1328	1329	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1300	1307	first strand
Strand 2	B	1314	1321	anti-parallel
Strand 3	B	1340	1343	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PBX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PBX