Analysis of interatomic Contacts of Structural Units in PDB entry:
8PBY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PBY entry

There is 1 chain in PDB entry 8PBY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 27	LEU 695

There are 62 helices in PDB entry 8PBY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	58	Right-handed alpha
Helix 2	AA2	A	101	104	Right-handed 310
Helix 3	AA3	A	138	147	Right-handed alpha
Helix 4	AA4	A	159	164	Right-handed alpha
Helix 5	AA5	A	170	176	Right-handed alpha
Helix 6	AA6	A	183	188	Right-handed alpha
Helix 7	AA7	A	236	243	Right-handed alpha
Helix 8	AA8	A	243	252	Right-handed alpha
Helix 9	AA9	A	271	278	Right-handed alpha
Helix 10	AB1	A	289	299	Right-handed alpha
Helix 11	AB2	A	349	359	Right-handed alpha
Helix 12	AB3	A	438	445	Right-handed alpha
Helix 13	AB4	A	489	496	Right-handed 310
Helix 14	AB5	A	513	522	Right-handed alpha
Helix 15	AB6	A	548	561	Right-handed alpha
Helix 16	AB7	A	581	585	Right-handed 310
Helix 17	AB8	A	596	600	Right-handed 310
Helix 18	AB9	A	601	606	Right-handed alpha
Helix 19	AC1	A	687	692	Right-handed alpha
Helix 20	AC2	A	717	719	Right-handed 310
Helix 21	AC3	A	750	754	Right-handed 310
Helix 22	AC4	A	812	820	Right-handed alpha
Helix 23	AC5	A	847	852	Right-handed alpha
Helix 24	AC6	A	858	864	Right-handed alpha
Helix 25	AC7	A	865	870	Right-handed alpha
Helix 26	AC8	B	99	103	Right-handed 310
Helix 27	AC9	B	110	124	Right-handed alpha
Helix 28	AD1	B	179	184	Right-handed alpha
Helix 29	AD2	B	212	216	Right-handed 310
Helix 30	AD3	B	312	317	Right-handed alpha
Helix 31	AD4	B	326	333	Right-handed alpha
Helix 32	AD5	B	362	369	Right-handed alpha
Helix 33	AD6	B	371	376	Right-handed 310
Helix 34	AD7	B	384	394	Right-handed alpha
Helix 35	AD8	B	411	416	Right-handed 310
Helix 36	AD9	B	446	453	Right-handed alpha
Helix 37	AE1	B	471	475	Right-handed 310
Helix 38	AE2	B	504	510	Right-handed alpha
Helix 39	AE3	B	574	583	Right-handed alpha
Helix 40	AE4	B	604	612	Right-handed 310
Helix 41	AE5	B	625	629	Right-handed 310
Helix 42	AE6	B	633	641	Right-handed alpha
Helix 43	AE7	B	661	670	Right-handed alpha
Helix 44	AE8	B	699	706	Right-handed alpha
Helix 45	AE9	B	713	717	Right-handed 310
Helix 46	AF1	B	721	726	Right-handed alpha
Helix 47	AF2	B	740	744	Right-handed 310
Helix 48	AF3	B	758	768	Right-handed alpha
Helix 49	AF4	B	808	810	Right-handed 310
Helix 50	AF5	B	903	917	Right-handed alpha
Helix 51	AF6	B	946	950	Right-handed 310
Helix 52	AF7	B	961	970	Right-handed alpha
Helix 53	AF8	B	1051	1057	Right-handed alpha
Helix 54	AF9	B	1080	1084	Right-handed 310
Helix 55	AG1	B	1134	1136	Right-handed 310
Helix 56	AG2	B	1137	1143	Right-handed alpha
Helix 57	AG3	B	1145	1154	Right-handed alpha
Helix 58	AG4	B	1157	1161	Right-handed 310
Helix 59	AG5	B	1192	1205	Right-handed alpha
Helix 60	AG6	B	1207	1212	Right-handed alpha
Helix 61	AG7	B	1255	1259	Right-handed 310
Helix 62	AG8	B	1281	1285	Right-handed 310

There are 33 sheets in PDB entry 8PBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	36	40	anti-parallel
Strand 3	A	52	53	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	71	first strand
Strand 2	A	76	82	anti-parallel
Strand 3	A	110	115	anti-parallel
Strand 4	A	125	131	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	97	99	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	215	first strand
Strand 2	A	149	151	anti-parallel
Strand 3	A	498	502	parallel
Strand 4	A	406	408	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	225	first strand
Strand 2	A	268	270	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	286	287	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	308	312	anti-parallel
Strand 3	A	321	326	anti-parallel
Strand 4	A	338	339	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	A	568	569	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	391	first strand
Strand 2	A	394	401	anti-parallel
Strand 3	A	541	547	anti-parallel
Strand 4	A	574	577	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	648	650	first strand
Strand 2	A	655	659	anti-parallel
Strand 3	A	681	685	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	698	701	first strand
Strand 2	A	710	715	anti-parallel
Strand 3	A	735	743	anti-parallel
Strand 4	A	761	770	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	775	780	first strand
Strand 2	A	786	792	anti-parallel
Strand 3	A	797	803	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	840	843	first strand
Strand 2	A	873	876	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	884	887	first strand
Strand 2	A	899	902	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	895	897	first strand
Strand 2	A	929	931	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	915	916	first strand
Strand 2	A	919	920	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	86	93	anti-parallel
Strand 3	B	128	134	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	165	first strand
Strand 2	B	169	170	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	194	first strand
Strand 2	B	200	207	anti-parallel
Strand 3	B	339	345	anti-parallel
Strand 4	B	353	360	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	247	first strand
Strand 2	B	300	302	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	293	first strand
Strand 2	B	277	282	anti-parallel
Strand 3	B	650	653	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	460	first strand
Strand 2	B	463	466	anti-parallel
Strand 3	B	487	492	anti-parallel
Strand 4	B	497	502	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	537	539	first strand
Strand 2	B	550	555	anti-parallel
Strand 3	B	692	698	anti-parallel
Strand 4	B	747	751	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	558	559	first strand
Strand 2	B	685	686	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	804	806	first strand
Strand 2	B	827	829	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	845	846	first strand
Strand 2	B	882	883	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	867	868	first strand
Strand 2	B	876	877	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	921	923	first strand
Strand 2	B	993	998	anti-parallel
Strand 3	B	1110	1112	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1021	1024	first strand
Strand 2	B	1027	1030	anti-parallel
Strand 3	B	1045	1047	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1067	1068	first strand
Strand 2	B	1076	1078	anti-parallel
Strand 3	B	1168	1171	anti-parallel
Strand 4	B	1217	1220	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1228	1229	first strand
Strand 2	B	1236	1237	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1301	1306	first strand
Strand 2	B	1314	1321	anti-parallel
Strand 3	B	1328	1329	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1301	1306	first strand
Strand 2	B	1314	1321	anti-parallel
Strand 3	B	1341	1343	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PBY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PBY