Analysis of interatomic Contacts of Structural Units in PDB entry:
8PC2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PC2 entry

There are 6 chains in PDB entry 8PC2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PRO 61	GLN 209
C	MET 16	CYS 112
D	MET 1	LYS 104
G	GLN 21	GLU 140
A	PRO 61	GLN 209
E	MET 16	ASN 61

There are 30 helices in PDB entry 8PC2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	141	145	Right-handed 310
Helix 2	AA2	B	157	170	Right-handed alpha
Helix 3	AA3	B	171	178	Right-handed 310
Helix 4	AA4	B	181	190	Right-handed alpha
Helix 5	AA5	B	193	208	Right-handed alpha
Helix 6	AA6	C	33	37	Right-handed alpha
Helix 7	AA7	C	39	46	Right-handed alpha
Helix 8	AA8	C	66	84	Right-handed alpha
Helix 9	AA9	C	96	111	Right-handed alpha
Helix 10	AB1	D	23	36	Right-handed alpha
Helix 11	AB2	D	38	40	Right-handed 310
Helix 12	AB3	D	63	67	Right-handed 310
Helix 13	AB4	D	100	104	Right-handed 310
Helix 14	AB5	G	70	74	Right-handed alpha
Helix 15	AB6	G	87	95	Right-handed alpha
Helix 16	AB7	G	109	112	Right-handed 310
Helix 17	AB8	A	157	170	Right-handed alpha
Helix 18	AB9	A	171	178	Right-handed 310
Helix 19	AC1	A	181	190	Right-handed alpha
Helix 20	AC2	A	194	208	Right-handed alpha
Helix 21	AC3	E	33	37	Right-handed alpha
Helix 22	AC4	E	39	46	Right-handed alpha
Helix 23	AC5	E	66	84	Right-handed alpha
Helix 24	AC6	E	96	111	Right-handed alpha
Helix 25	AC7	F	23	36	Right-handed alpha
Helix 26	AC8	F	38	40	Right-handed 310
Helix 27	AC9	F	63	67	Right-handed 310
Helix 28	AD1	H	70	74	Right-handed alpha
Helix 29	AD2	H	87	95	Right-handed alpha
Helix 30	AD3	H	109	112	Right-handed 310

There are 12 sheets in PDB entry 8PC2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	112	first strand
Strand 2	B	71	78	anti-parallel
Strand 3	B	147	152	parallel
Strand 4	B	129	130	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	97	first strand
Strand 2	B	84	89	anti-parallel
Strand 3	B	117	121	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	18	22	parallel
Strand 3	C	28	32	anti-parallel
Strand 4	D	12	19	parallel
Strand 5	D	2	9	anti-parallel
Strand 6	D	73	81	parallel
Strand 7	D	42	45	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	18	22	parallel
Strand 3	C	28	32	anti-parallel
Strand 4	D	12	19	parallel
Strand 5	D	2	9	anti-parallel
Strand 6	D	73	81	parallel
Strand 7	D	84	85	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	24	first strand
Strand 2	G	33	39	anti-parallel
Strand 3	G	102	107	anti-parallel
Strand 4	G	128	138	anti-parallel
Strand 5	G	52	61	anti-parallel
Strand 6	G	67	69	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	24	first strand
Strand 2	G	33	39	anti-parallel
Strand 3	G	102	107	anti-parallel
Strand 4	G	128	138	anti-parallel
Strand 5	G	52	61	anti-parallel
Strand 6	G	77	80	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	112	first strand
Strand 2	A	71	78	anti-parallel
Strand 3	A	147	152	parallel
Strand 4	A	129	130	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	97	first strand
Strand 2	A	84	89	anti-parallel
Strand 3	A	117	121	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	61	first strand
Strand 2	E	18	22	parallel
Strand 3	E	28	32	anti-parallel
Strand 4	F	12	19	parallel
Strand 5	F	2	9	anti-parallel
Strand 6	F	73	81	parallel
Strand 7	F	42	45	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	61	first strand
Strand 2	E	18	22	parallel
Strand 3	E	28	32	anti-parallel
Strand 4	F	12	19	parallel
Strand 5	F	2	9	anti-parallel
Strand 6	F	73	81	parallel
Strand 7	F	84	85	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	24	first strand
Strand 2	H	33	39	anti-parallel
Strand 3	H	102	107	anti-parallel
Strand 4	H	128	138	anti-parallel
Strand 5	H	52	61	anti-parallel
Strand 6	H	68	69	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	24	first strand
Strand 2	H	33	39	anti-parallel
Strand 3	H	102	107	anti-parallel
Strand 4	H	128	138	anti-parallel
Strand 5	H	52	61	anti-parallel
Strand 6	H	77	80	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PC2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PC2