Analysis of interatomic Contacts of Structural Units in PDB entry:
8PC4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PC4 entry

There are 2 chains in PDB entry 8PC4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 57ASN 388
B
 LYS 56ASP 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8PC4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
96 104Right-handed alpha
Helix 2
AA2
A
109 114Right-handed alpha
Helix 3
AA3
A
192 203Right-handed alpha
Helix 4
AA4
A
215 223Right-handed alpha
Helix 5
AA5
A
290 298Right-handed alpha
Helix 6
AA6
A
313 318Right-handed alpha
Helix 7
AA7
A
323 334Right-handed alpha
Helix 8
AA8
A
355 368Right-handed alpha
Helix 9
AA9
B
96 104Right-handed alpha
Helix 10
AB1
B
109 114Right-handed alpha
Helix 11
AB2
B
192 203Right-handed alpha
Helix 12
AB3
B
215 223Right-handed alpha
Helix 13
AB4
B
289 298Right-handed alpha
Helix 14
AB5
B
313 318Right-handed alpha
Helix 15
AB6
B
323 334Right-handed alpha
Helix 16
AB7
B
355 368Right-handed alpha
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There are 4 sheets in PDB entry 8PC4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 230first strand
Strand 2
A
208 212parallel
Strand 3
A
180 182parallel
Strand 4
A
142 146parallel
Strand 5
A
135 139anti-parallel
Strand 6
A
125 129anti-parallel
Strand 7
A
383 386anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 236first strand
Strand 2
A
245 249anti-parallel
Strand 3
A
269 273anti-parallel
Strand 4
A
278 281anti-parallel
Strand 5
A
301 305parallel
Strand 6
A
336 339parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 230first strand
Strand 2
B
208 212parallel
Strand 3
B
180 182parallel
Strand 4
B
142 146parallel
Strand 5
B
135 139anti-parallel
Strand 6
B
125 129anti-parallel
Strand 7
B
383 386anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 236first strand
Strand 2
B
245 249anti-parallel
Strand 3
B
269 273anti-parallel
Strand 4
B
278 281anti-parallel
Strand 5
B
301 307parallel
Strand 6
B
336 342parallel
Strand 7
B
375 376parallel
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