Analysis of interatomic Contacts of Structural Units in PDB entry:
8PC7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PC7 entry

There are 4 chains in PDB entry 8PC7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 9GLY 347
B
 ILE 9GLY 347
C
 ALA 10GLY 347
D
 ILE 9GLY 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 8PC7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 25Right-handed alpha
Helix 2
AA2
A
36 44Right-handed alpha
Helix 3
AA3
A
48 61Right-handed alpha
Helix 4
AA4
A
111 115Right-handed 310
Helix 5
AA5
A
121 133Right-handed alpha
Helix 6
AA6
A
159 175Right-handed alpha
Helix 7
AA7
A
175 180Right-handed alpha
Helix 8
AA8
A
192 207Right-handed alpha
Helix 9
AA9
A
208 209Right-handed 310
Helix 10
AB1
A
210 214Right-handed 310
Helix 11
AB2
A
234 239Right-handed alpha
Helix 12
AB3
A
249 256Right-handed alpha
Helix 13
AB4
A
256 262Right-handed alpha
Helix 14
AB5
A
268 272Right-handed 310
Helix 15
AB6
A
273 278Right-handed alpha
Helix 16
AB7
A
293 307Right-handed alpha
Helix 17
AB8
A
322 326Right-handed 310
Helix 18
AB9
A
330 346Right-handed alpha
Helix 19
AC1
B
16 25Right-handed alpha
Helix 20
AC2
B
36 45Right-handed alpha
Helix 21
AC3
B
48 61Right-handed alpha
Helix 22
AC4
B
111 115Right-handed 310
Helix 23
AC5
B
121 133Right-handed alpha
Helix 24
AC6
B
159 175Right-handed alpha
Helix 25
AC7
B
175 180Right-handed alpha
Helix 26
AC8
B
192 207Right-handed alpha
Helix 27
AC9
B
208 209Right-handed 310
Helix 28
AD1
B
210 214Right-handed 310
Helix 29
AD2
B
234 239Right-handed alpha
Helix 30
AD3
B
249 256Right-handed alpha
Helix 31
AD4
B
256 262Right-handed alpha
Helix 32
AD5
B
268 272Right-handed 310
Helix 33
AD6
B
273 278Right-handed alpha
Helix 34
AD7
B
293 307Right-handed alpha
Helix 35
AD8
B
322 326Right-handed 310
Helix 36
AD9
B
330 346Right-handed alpha
Helix 37
AE1
C
16 25Right-handed alpha
Helix 38
AE2
C
36 45Right-handed alpha
Helix 39
AE3
C
48 61Right-handed alpha
Helix 40
AE4
C
111 115Right-handed 310
Helix 41
AE5
C
121 133Right-handed alpha
Helix 42
AE6
C
159 175Right-handed alpha
Helix 43
AE7
C
175 180Right-handed alpha
Helix 44
AE8
C
192 207Right-handed alpha
Helix 45
AE9
C
208 209Right-handed 310
Helix 46
AF1
C
210 214Right-handed 310
Helix 47
AF2
C
234 239Right-handed alpha
Helix 48
AF3
C
249 256Right-handed alpha
Helix 49
AF4
C
256 262Right-handed alpha
Helix 50
AF5
C
268 272Right-handed 310
Helix 51
AF6
C
273 278Right-handed alpha
Helix 52
AF7
C
293 307Right-handed alpha
Helix 53
AF8
C
322 326Right-handed 310
Helix 54
AF9
C
330 346Right-handed alpha
Helix 55
AG1
D
16 24Right-handed alpha
Helix 56
AG2
D
36 45Right-handed alpha
Helix 57
AG3
D
48 61Right-handed alpha
Helix 58
AG4
D
111 115Right-handed 310
Helix 59
AG5
D
121 133Right-handed alpha
Helix 60
AG6
D
159 175Right-handed alpha
Helix 61
AG7
D
175 180Right-handed alpha
Helix 62
AG8
D
192 207Right-handed alpha
Helix 63
AG9
D
208 209Right-handed 310
Helix 64
AH1
D
210 214Right-handed 310
Helix 65
AH2
D
234 239Right-handed alpha
Helix 66
AH3
D
249 256Right-handed alpha
Helix 67
AH4
D
256 262Right-handed alpha
Helix 68
AH5
D
268 272Right-handed 310
Helix 69
AH6
D
273 278Right-handed alpha
Helix 70
AH7
D
293 307Right-handed alpha
Helix 71
AH8
D
322 326Right-handed 310
Helix 72
AH9
D
330 346Right-handed alpha
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There are 2 sheets in PDB entry 8PC7. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 83first strand
Strand 2
A
88 97anti-parallel
Strand 3
A
137 141anti-parallel
Strand 4
A
103 109parallel
Strand 5
A
181 191parallel
Strand 6
A
217 220parallel
Strand 7
A
283 288parallel
Strand 8
A
311 316parallel
Strand 9
B
311 317anti-parallel
Strand 10
B
283 288parallel
Strand 11
B
216 220parallel
Strand 12
B
181 191parallel
Strand 13
B
103 109parallel
Strand 14
B
137 141parallel
Strand 15
B
88 97anti-parallel
Strand 16
B
74 83anti-parallel
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There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
74 83first strand
Strand 2
C
88 97anti-parallel
Strand 3
C
137 141anti-parallel
Strand 4
C
103 109parallel
Strand 5
C
181 191parallel
Strand 6
C
216 220parallel
Strand 7
C
283 288parallel
Strand 8
C
311 316parallel
Strand 9
D
311 316anti-parallel
Strand 10
D
283 288parallel
Strand 11
D
216 220parallel
Strand 12
D
181 191parallel
Strand 13
D
103 109parallel
Strand 14
D
137 141parallel
Strand 15
D
88 97anti-parallel
Strand 16
D
74 83anti-parallel
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