Analysis of interatomic Contacts of Structural Units in PDB entry:
8PD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PD5 entry

There is 1 chain in PDB entry 8PD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 71ASN 1195
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 8PD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
77 96Right-handed alpha
Helix 2
2
A
102 119Right-handed alpha
Helix 3
3
A
121 131Right-handed alpha
Helix 4
4
A
135 152Right-handed alpha
Helix 5
5
A
156 187Right-handed alpha
Helix 6
6
A
195 205Right-handed alpha
Helix 7
7
A
210 217Right-handed alpha
Helix 8
8
A
223 253Right-handed alpha
Helix 9
9
A
261 272Right-handed alpha
Helix 10
10
A
274 292Right-handed alpha
Helix 11
11
A
297 317Right-handed alpha
Helix 12
12
A
323 336Right-handed alpha
Helix 13
13
A
338 340Right-handed alpha
Helix 14
14
A
343 374Right-handed alpha
Helix 15
15
A
377 379Right-handed alpha
Helix 16
16
A
382 412Right-handed alpha
Helix 17
17
A
419 427Right-handed alpha
Helix 18
18
A
433 445Right-handed alpha
Helix 19
19
A
450 468Right-handed alpha
Helix 20
20
A
470 480Right-handed alpha
Helix 21
21
A
488 513Right-handed alpha
Helix 22
22
A
523 529Right-handed alpha
Helix 23
23
A
572 599Right-handed alpha
Helix 24
24
A
605 620Right-handed alpha
Helix 25
25
A
628 635Right-handed alpha
Helix 26
26
A
639 651Right-handed alpha
Helix 27
27
A
655 658Right-handed alpha
Helix 28
28
A
678 706Right-handed alpha
Helix 29
30
A
762 782Right-handed alpha
Helix 30
32
A
811 857Right-handed alpha
Helix 31
33
A
861 888Right-handed alpha
Helix 32
34
A
890 918Right-handed alpha
Helix 33
35
A
924 940Right-handed alpha
Helix 34
36
A
953 959Right-handed alpha
Helix 35
37
A
967 976Right-handed alpha
Helix 36
38
A
1044 1049Right-handed alpha
Helix 37
39
A
1070 1079Right-handed alpha
Helix 38
40
A
1086 1107Right-handed alpha
Helix 39
41
A
1114 1123Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 8PD5. Click on sheet of interest to get list of strands forming it: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11,

There are 1 strands in 1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
978 982first strand
Back to list of sheets
Back to top of page

There are 1 strands in 2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
997 1003first strand
Back to list of sheets
Back to top of page

There are 1 strands in 3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1006 1010first strand
Back to list of sheets
Back to top of page

There are 1 strands in 4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1032 1036first strand
Back to list of sheets
Back to top of page

There are 1 strands in 5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1056 1059first strand
Back to list of sheets
Back to top of page

There are 1 strands in 6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1063 1069first strand
Back to list of sheets
Back to top of page

There are 1 strands in 7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1134 1136first strand
Back to list of sheets
Back to top of page

There are 1 strands in 8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1142 1147first strand
Back to list of sheets
Back to top of page

There are 1 strands in 9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1152 1154first strand
Back to list of sheets
Back to top of page

There are 1 strands in 10 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1173 1176first strand
Back to list of sheets
Back to top of page

There are 1 strands in 11 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1186 1190first strand
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il