Analysis of interatomic Contacts of Structural Units in PDB entry:
8PD8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PD8 entry

There are 2 chains in PDB entry 8PD8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 72	ASN 1191
B	ALA 72	ASN 1191

There are 94 helices in PDB entry 8PD8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	72	95	Right-handed alpha
Helix 2	AA2	A	101	120	Right-handed alpha
Helix 3	AA3	A	120	132	Right-handed alpha
Helix 4	AA4	A	134	141	Right-handed alpha
Helix 5	AA5	A	141	154	Right-handed alpha
Helix 6	AA6	A	155	162	Right-handed alpha
Helix 7	AA7	A	162	188	Right-handed alpha
Helix 8	AA8	A	194	206	Right-handed alpha
Helix 9	AA9	A	210	221	Right-handed alpha
Helix 10	AB1	A	223	254	Right-handed alpha
Helix 11	AB2	A	260	273	Right-handed alpha
Helix 12	AB3	A	273	291	Right-handed alpha
Helix 13	AB4	A	296	317	Right-handed alpha
Helix 14	AB5	A	322	337	Right-handed alpha
Helix 15	AB6	A	338	341	Right-handed 310
Helix 16	AB7	A	342	375	Right-handed alpha
Helix 17	AB8	A	376	380	Right-handed 310
Helix 18	AB9	A	381	411	Right-handed alpha
Helix 19	AC1	A	418	428	Right-handed alpha
Helix 20	AC2	A	432	447	Right-handed alpha
Helix 21	AC3	A	449	469	Right-handed alpha
Helix 22	AC4	A	469	481	Right-handed alpha
Helix 23	AC5	A	487	514	Right-handed alpha
Helix 24	AC6	A	522	531	Right-handed alpha
Helix 25	AC7	A	572	600	Right-handed alpha
Helix 26	AC8	A	604	621	Right-handed alpha
Helix 27	AC9	A	627	636	Right-handed alpha
Helix 28	AD1	A	639	653	Right-handed alpha
Helix 29	AD2	A	678	705	Right-handed alpha
Helix 30	AD3	A	726	743	Right-handed alpha
Helix 31	AD4	A	743	755	Right-handed alpha
Helix 32	AD5	A	756	760	Right-handed 310
Helix 33	AD6	A	761	780	Right-handed alpha
Helix 34	AD7	A	781	783	Right-handed 310
Helix 35	AD8	A	795	812	Right-handed alpha
Helix 36	AD9	A	813	854	Right-handed alpha
Helix 37	AE1	A	855	857	Right-handed 310
Helix 38	AE2	A	862	889	Right-handed alpha
Helix 39	AE3	A	889	919	Right-handed alpha
Helix 40	AE4	A	923	942	Right-handed alpha
Helix 41	AE5	A	952	958	Right-handed alpha
Helix 42	AE6	A	966	976	Right-handed alpha
Helix 43	AE7	A	1045	1050	Right-handed alpha
Helix 44	AE8	A	1070	1080	Right-handed alpha
Helix 45	AE9	A	1085	1108	Right-handed alpha
Helix 46	AF1	A	1113	1123	Right-handed alpha
Helix 47	AF2	A	1179	1183	Right-handed 310
Helix 48	AF3	B	73	95	Right-handed alpha
Helix 49	AF4	B	101	120	Right-handed alpha
Helix 50	AF5	B	120	132	Right-handed alpha
Helix 51	AF6	B	134	141	Right-handed alpha
Helix 52	AF7	B	141	154	Right-handed alpha
Helix 53	AF8	B	155	162	Right-handed alpha
Helix 54	AF9	B	162	188	Right-handed alpha
Helix 55	AG1	B	194	206	Right-handed alpha
Helix 56	AG2	B	210	221	Right-handed alpha
Helix 57	AG3	B	223	254	Right-handed alpha
Helix 58	AG4	B	260	273	Right-handed alpha
Helix 59	AG5	B	273	291	Right-handed alpha
Helix 60	AG6	B	296	317	Right-handed alpha
Helix 61	AG7	B	322	337	Right-handed alpha
Helix 62	AG8	B	338	341	Right-handed 310
Helix 63	AG9	B	342	375	Right-handed alpha
Helix 64	AH1	B	376	380	Right-handed 310
Helix 65	AH2	B	381	411	Right-handed alpha
Helix 66	AH3	B	418	428	Right-handed alpha
Helix 67	AH4	B	432	447	Right-handed alpha
Helix 68	AH5	B	449	469	Right-handed alpha
Helix 69	AH6	B	469	481	Right-handed alpha
Helix 70	AH7	B	487	514	Right-handed alpha
Helix 71	AH8	B	522	531	Right-handed alpha
Helix 72	AH9	B	572	600	Right-handed alpha
Helix 73	AI1	B	604	621	Right-handed alpha
Helix 74	AI2	B	627	636	Right-handed alpha
Helix 75	AI3	B	639	653	Right-handed alpha
Helix 76	AI4	B	678	705	Right-handed alpha
Helix 77	AI5	B	726	743	Right-handed alpha
Helix 78	AI6	B	743	755	Right-handed alpha
Helix 79	AI7	B	756	760	Right-handed 310
Helix 80	AI8	B	761	780	Right-handed alpha
Helix 81	AI9	B	781	783	Right-handed 310
Helix 82	AJ1	B	795	812	Right-handed alpha
Helix 83	AJ2	B	813	854	Right-handed alpha
Helix 84	AJ3	B	855	857	Right-handed 310
Helix 85	AJ4	B	862	889	Right-handed alpha
Helix 86	AJ5	B	889	919	Right-handed alpha
Helix 87	AJ6	B	923	942	Right-handed alpha
Helix 88	AJ7	B	952	958	Right-handed alpha
Helix 89	AJ8	B	966	976	Right-handed alpha
Helix 90	AJ9	B	1045	1050	Right-handed alpha
Helix 91	AK1	B	1070	1080	Right-handed alpha
Helix 92	AK2	B	1085	1108	Right-handed alpha
Helix 93	AK3	B	1113	1123	Right-handed alpha
Helix 94	AK4	B	1179	1183	Right-handed 310

There are 8 sheets in PDB entry 8PD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	978	982	first strand
Strand 2	A	1063	1069	anti-parallel
Strand 3	A	997	1003	anti-parallel
Strand 4	A	1041	1042	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	987	989	first strand
Strand 2	A	1056	1059	anti-parallel
Strand 3	A	1006	1009	anti-parallel
Strand 4	A	1034	1036	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1125	1126	first strand
Strand 2	A	1185	1189	anti-parallel
Strand 3	A	1144	1149	anti-parallel
Strand 4	A	1165	1166	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1134	1136	first strand
Strand 2	A	1173	1176	anti-parallel
Strand 3	A	1152	1154	anti-parallel
Strand 4	A	1160	1161	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	978	982	first strand
Strand 2	B	1063	1069	anti-parallel
Strand 3	B	997	1003	anti-parallel
Strand 4	B	1041	1042	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	987	989	first strand
Strand 2	B	1056	1059	anti-parallel
Strand 3	B	1006	1009	anti-parallel
Strand 4	B	1034	1036	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1125	1126	first strand
Strand 2	B	1185	1189	anti-parallel
Strand 3	B	1144	1149	anti-parallel
Strand 4	B	1165	1166	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1134	1136	first strand
Strand 2	B	1173	1176	anti-parallel
Strand 3	B	1152	1154	anti-parallel
Strand 4	B	1160	1161	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PD8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PD8