Analysis of interatomic Contacts of Structural Units in PDB entry:
8PD9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PD9 entry

There is 1 chain in PDB entry 8PD9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 72ASN 1195
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8PD9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 95Right-handed alpha
Helix 2
AA2
A
101 120Right-handed alpha
Helix 3
AA3
A
120 132Right-handed alpha
Helix 4
AA4
A
134 139Right-handed alpha
Helix 5
AA5
A
141 153Right-handed alpha
Helix 6
AA6
A
155 162Right-handed alpha
Helix 7
AA7
A
162 189Right-handed alpha
Helix 8
AA8
A
194 206Right-handed alpha
Helix 9
AA9
A
210 220Right-handed alpha
Helix 10
AB1
A
223 254Right-handed alpha
Helix 11
AB2
A
260 273Right-handed alpha
Helix 12
AB3
A
273 291Right-handed alpha
Helix 13
AB4
A
296 317Right-handed alpha
Helix 14
AB5
A
322 337Right-handed alpha
Helix 15
AB6
A
338 341Right-handed 310
Helix 16
AB7
A
342 376Right-handed alpha
Helix 17
AB8
A
377 380Right-handed 310
Helix 18
AB9
A
381 411Right-handed alpha
Helix 19
AC1
A
418 428Right-handed alpha
Helix 20
AC2
A
432 447Right-handed alpha
Helix 21
AC3
A
449 469Right-handed alpha
Helix 22
AC4
A
469 481Right-handed alpha
Helix 23
AC5
A
487 513Right-handed alpha
Helix 24
AC6
A
522 531Right-handed alpha
Helix 25
AC7
A
571 600Right-handed alpha
Helix 26
AC8
A
604 620Right-handed alpha
Helix 27
AC9
A
627 636Right-handed alpha
Helix 28
AD1
A
639 653Right-handed alpha
Helix 29
AD2
A
679 706Right-handed alpha
Helix 30
AD3
A
726 755Right-handed alpha
Helix 31
AD4
A
756 760Right-handed 310
Helix 32
AD5
A
761 783Right-handed alpha
Helix 33
AD6
A
798 803Right-handed alpha
Helix 34
AD7
A
803 812Right-handed alpha
Helix 35
AD8
A
813 858Right-handed alpha
Helix 36
AD9
A
860 889Right-handed alpha
Helix 37
AE1
A
889 920Right-handed alpha
Helix 38
AE2
A
925 942Right-handed alpha
Helix 39
AE3
A
952 960Right-handed alpha
Helix 40
AE4
A
966 975Right-handed alpha
Helix 41
AE5
A
1043 1049Right-handed alpha
Helix 42
AE6
A
1070 1080Right-handed alpha
Helix 43
AE7
A
1085 1108Right-handed alpha
Helix 44
AE8
A
1113 1123Right-handed alpha
Helix 45
AE9
A
1179 1183Right-handed 310
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There are 4 sheets in PDB entry 8PD9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
978 981first strand
Strand 2
A
1064 1069anti-parallel
Strand 3
A
997 1003anti-parallel
Strand 4
A
1041 1042anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
987 989first strand
Strand 2
A
1056 1059anti-parallel
Strand 3
A
1006 1010anti-parallel
Strand 4
A
1032 1036anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1125 1126first strand
Strand 2
A
1185 1190anti-parallel
Strand 3
A
1142 1149anti-parallel
Strand 4
A
1165 1166anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1134 1136first strand
Strand 2
A
1173 1175anti-parallel
Strand 3
A
1152 1154anti-parallel
Strand 4
A
1160 1161anti-parallel
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