Analysis of interatomic Contacts of Structural Units in PDB entry:
8PDA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PDA entry

There is 1 chain in PDB entry 8PDA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 28GLU 1313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8PDA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 64Right-handed 310
Helix 2
AA2
A
67 77Right-handed alpha
Helix 3
AA3
A
113 162Right-handed alpha
Helix 4
AA4
A
171 176Right-handed alpha
Helix 5
AA5
A
187 226Right-handed alpha
Helix 6
AA6
A
228 238Right-handed alpha
Helix 7
AA7
A
469 525Right-handed alpha
Helix 8
AA8
A
525 535Right-handed alpha
Helix 9
AA9
A
540 563Right-handed alpha
Helix 10
AB1
A
569 597Right-handed alpha
Helix 11
AB2
A
607 655Right-handed alpha
Helix 12
AB3
A
662 667Right-handed alpha
Helix 13
AB4
A
670 672Right-handed 310
Helix 14
AB5
A
673 700Right-handed alpha
Helix 15
AB6
A
720 726Right-handed alpha
Helix 16
AB7
A
727 756Right-handed alpha
Helix 17
AB8
A
770 774Right-handed 310
Helix 18
AB9
A
780 799Right-handed alpha
Helix 19
AC1
A
803 822Right-handed alpha
Helix 20
AC2
A
824 829Right-handed alpha
Helix 21
AC3
A
833 837Right-handed 310
Helix 22
AC4
A
844 851Right-handed alpha
Helix 23
AC5
A
851 858Right-handed alpha
Helix 24
AC6
A
868 879Right-handed alpha
Helix 25
AC7
A
905 909Right-handed 310
Helix 26
AC8
A
925 937Right-handed alpha
Helix 27
AC9
A
939 943Right-handed 310
Helix 28
AD1
A
963 998Right-handed alpha
Helix 29
AD2
A
998 1007Right-handed alpha
Helix 30
AD3
A
1014 1024Right-handed alpha
Helix 31
AD4
A
1029 1051Right-handed alpha
Helix 32
AD5
A
1094 1106Right-handed alpha
Helix 33
AD6
A
1114 1147Right-handed alpha
Helix 34
AD7
A
1155 1162Right-handed alpha
Helix 35
AD8
A
1164 1195Right-handed alpha
Helix 36
AD9
A
1203 1234Right-handed alpha
Helix 37
AE1
A
1248 1256Right-handed alpha
Helix 38
AE2
A
1267 1309Right-handed alpha
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There are 2 sheets in PDB entry 8PDA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
65 66anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
891 896first strand
Strand 2
A
952 957anti-parallel
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