Analysis of interatomic Contacts of Structural Units in PDB entry:
8PDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PDM entry

There are 2 chains in PDB entry 8PDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3ASN 365
B
 C 71 C 77
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8PDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 20Right-handed alpha
Helix 2
AA2
A
37 39Right-handed 310
Helix 3
AA3
A
40 51Right-handed alpha
Helix 4
AA4
A
61 75Right-handed alpha
Helix 5
AA5
A
75 86Right-handed alpha
Helix 6
AA6
A
120 141Right-handed alpha
Helix 7
AA7
A
156 170Right-handed alpha
Helix 8
AA8
A
175 191Right-handed alpha
Helix 9
AA9
A
191 198Right-handed alpha
Helix 10
AB1
A
202 217Right-handed alpha
Helix 11
AB2
A
218 233Right-handed alpha
Helix 12
AB3
A
238 251Right-handed alpha
Helix 13
AB4
A
256 269Right-handed alpha
Helix 14
AB5
A
270 274Right-handed 310
Helix 15
AB6
A
275 296Right-handed alpha
Helix 16
AB7
A
297 300Right-handed 310
Helix 17
AB8
A
318 332Right-handed alpha
Helix 18
AB9
A
344 361Right-handed alpha
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There are 2 sheets in PDB entry 8PDM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
91 93parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
113 115anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il