Analysis of interatomic Contacts of Structural Units in PDB entry:
8PDU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PDU entry

There are 2 chains in PDB entry 8PDU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 72ALA 1192
B
 ALA 72ALA 1192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 90 helices in PDB entry 8PDU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 95Right-handed alpha
Helix 2
AA2
A
101 120Right-handed alpha
Helix 3
AA3
A
120 132Right-handed alpha
Helix 4
AA4
A
134 153Right-handed alpha
Helix 5
AA5
A
155 161Right-handed alpha
Helix 6
AA6
A
162 188Right-handed alpha
Helix 7
AA7
A
194 207Right-handed alpha
Helix 8
AA8
A
210 221Right-handed alpha
Helix 9
AA9
A
223 251Right-handed alpha
Helix 10
AB1
A
260 273Right-handed alpha
Helix 11
AB2
A
273 291Right-handed alpha
Helix 12
AB3
A
296 318Right-handed alpha
Helix 13
AB4
A
322 337Right-handed alpha
Helix 14
AB5
A
338 341Right-handed 310
Helix 15
AB6
A
342 375Right-handed alpha
Helix 16
AB7
A
376 380Right-handed 310
Helix 17
AB8
A
381 382Right-handed 310
Helix 18
AB9
A
383 413Right-handed alpha
Helix 19
AC1
A
418 428Right-handed alpha
Helix 20
AC2
A
432 447Right-handed alpha
Helix 21
AC3
A
449 469Right-handed alpha
Helix 22
AC4
A
469 481Right-handed alpha
Helix 23
AC5
A
487 514Right-handed alpha
Helix 24
AC6
A
522 531Right-handed alpha
Helix 25
AC7
A
572 600Right-handed alpha
Helix 26
AC8
A
604 621Right-handed alpha
Helix 27
AC9
A
627 636Right-handed alpha
Helix 28
AD1
A
639 652Right-handed alpha
Helix 29
AD2
A
653 657Right-handed 310
Helix 30
AD3
A
670 677Right-handed alpha
Helix 31
AD4
A
677 706Right-handed alpha
Helix 32
AD5
A
726 755Right-handed alpha
Helix 33
AD6
A
756 760Right-handed 310
Helix 34
AD7
A
761 780Right-handed alpha
Helix 35
AD8
A
798 858Right-handed alpha
Helix 36
AD9
A
860 889Right-handed alpha
Helix 37
AE1
A
889 920Right-handed alpha
Helix 38
AE2
A
923 943Right-handed alpha
Helix 39
AE3
A
952 959Right-handed alpha
Helix 40
AE4
A
966 977Right-handed alpha
Helix 41
AE5
A
1045 1050Right-handed alpha
Helix 42
AE6
A
1070 1080Right-handed alpha
Helix 43
AE7
A
1085 1108Right-handed alpha
Helix 44
AE8
A
1113 1123Right-handed alpha
Helix 45
AE9
A
1128 1132Right-handed 310
Helix 46
AF1
B
76 95Right-handed alpha
Helix 47
AF2
B
101 120Right-handed alpha
Helix 48
AF3
B
120 132Right-handed alpha
Helix 49
AF4
B
134 153Right-handed alpha
Helix 50
AF5
B
155 161Right-handed alpha
Helix 51
AF6
B
162 188Right-handed alpha
Helix 52
AF7
B
194 207Right-handed alpha
Helix 53
AF8
B
210 221Right-handed alpha
Helix 54
AF9
B
223 251Right-handed alpha
Helix 55
AG1
B
260 273Right-handed alpha
Helix 56
AG2
B
273 291Right-handed alpha
Helix 57
AG3
B
296 318Right-handed alpha
Helix 58
AG4
B
322 337Right-handed alpha
Helix 59
AG5
B
338 341Right-handed 310
Helix 60
AG6
B
342 375Right-handed alpha
Helix 61
AG7
B
376 380Right-handed 310
Helix 62
AG8
B
381 382Right-handed 310
Helix 63
AG9
B
383 413Right-handed alpha
Helix 64
AH1
B
418 428Right-handed alpha
Helix 65
AH2
B
432 447Right-handed alpha
Helix 66
AH3
B
449 469Right-handed alpha
Helix 67
AH4
B
469 481Right-handed alpha
Helix 68
AH5
B
487 514Right-handed alpha
Helix 69
AH6
B
522 531Right-handed alpha
Helix 70
AH7
B
572 600Right-handed alpha
Helix 71
AH8
B
604 621Right-handed alpha
Helix 72
AH9
B
627 636Right-handed alpha
Helix 73
AI1
B
639 652Right-handed alpha
Helix 74
AI2
B
653 657Right-handed 310
Helix 75
AI3
B
670 677Right-handed alpha
Helix 76
AI4
B
677 706Right-handed alpha
Helix 77
AI5
B
726 755Right-handed alpha
Helix 78
AI6
B
756 760Right-handed 310
Helix 79
AI7
B
761 780Right-handed alpha
Helix 80
AI8
B
798 858Right-handed alpha
Helix 81
AI9
B
860 889Right-handed alpha
Helix 82
AJ1
B
889 920Right-handed alpha
Helix 83
AJ2
B
923 943Right-handed alpha
Helix 84
AJ3
B
952 959Right-handed alpha
Helix 85
AJ4
B
966 977Right-handed alpha
Helix 86
AJ5
B
1045 1050Right-handed alpha
Helix 87
AJ6
B
1070 1080Right-handed alpha
Helix 88
AJ7
B
1085 1108Right-handed alpha
Helix 89
AJ8
B
1113 1123Right-handed alpha
Helix 90
AJ9
B
1128 1132Right-handed 310
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There are 8 sheets in PDB entry 8PDU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
978 982first strand
Strand 2
A
1063 1069anti-parallel
Strand 3
A
997 1003anti-parallel
Strand 4
A
1041 1042anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
987 989first strand
Strand 2
A
1057 1059anti-parallel
Strand 3
A
1006 1008anti-parallel
Strand 4
A
1034 1036anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1125 1126first strand
Strand 2
A
1185 1189anti-parallel
Strand 3
A
1144 1149anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1134 1136first strand
Strand 2
A
1173 1175anti-parallel
Strand 3
A
1152 1154anti-parallel
Strand 4
A
1160 1161anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
978 982first strand
Strand 2
B
1063 1069anti-parallel
Strand 3
B
997 1003anti-parallel
Strand 4
B
1041 1042anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
987 989first strand
Strand 2
B
1057 1059anti-parallel
Strand 3
B
1006 1008anti-parallel
Strand 4
B
1034 1036anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1125 1126first strand
Strand 2
B
1185 1189anti-parallel
Strand 3
B
1144 1149anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1134 1136first strand
Strand 2
B
1173 1175anti-parallel
Strand 3
B
1152 1154anti-parallel
Strand 4
B
1160 1161anti-parallel
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