Analysis of interatomic Contacts of Structural Units in PDB entry:
8PDZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PDZ entry

There are 28 chains in PDB entry 8PDZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	ALA 3	PHE 115
Q	ALA 3	PHE 115
P	ALA 3	PHE 115
O	ALA 3	PHE 115
U	ALA 3	PHE 115
T	ALA 3	PHE 115
S	ALA 3	PHE 115
V	ALA 3	PHE 115
W	ALA 3	PHE 115
X	ALA 3	PHE 115
Y	ALA 3	PHE 115
Z	ALA 3	PHE 115
a	ALA 3	PHE 115
b	ALA 3	PHE 115
H	ALA 3	PHE 115
I	ALA 3	PHE 115
J	ALA 3	PHE 115
K	ALA 3	PHE 115
L	ALA 3	PHE 115
M	ALA 3	PHE 115
N	ALA 3	PHE 115
A	ALA 3	PHE 115
B	ALA 3	PHE 115
C	ALA 3	PHE 115
D	ALA 3	PHE 115
E	ALA 3	PHE 115
F	ALA 3	PHE 115
G	ALA 3	PHE 115

There are no helices in PDB entry 8PDZ

There are 28 sheets in PDB entry 8PDZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	4	5	first strand
Strand 2	L	14	26	parallel
Strand 3	L	103	115	anti-parallel
Strand 4	L	46	53	anti-parallel
Strand 5	L	81	88	anti-parallel
Strand 6	K	34	39	parallel
Strand 7	K	92	98	anti-parallel
Strand 8	K	62	67	anti-parallel
Strand 9	K	70	77	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	70	77	first strand
Strand 2	Q	62	67	anti-parallel
Strand 3	Q	92	98	anti-parallel
Strand 4	Q	34	39	anti-parallel
Strand 5	R	81	88	parallel
Strand 6	R	46	53	anti-parallel
Strand 7	R	103	115	anti-parallel
Strand 8	R	14	26	anti-parallel
Strand 9	X	4	5	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	70	77	first strand
Strand 2	R	62	67	anti-parallel
Strand 3	R	92	98	anti-parallel
Strand 4	R	34	39	anti-parallel
Strand 5	S	81	88	parallel
Strand 6	S	46	53	anti-parallel
Strand 7	S	103	115	anti-parallel
Strand 8	S	14	26	anti-parallel
Strand 9	Y	4	5	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	4	5	first strand
Strand 2	K	14	26	parallel
Strand 3	K	103	115	anti-parallel
Strand 4	K	46	53	anti-parallel
Strand 5	K	81	88	anti-parallel
Strand 6	J	34	39	parallel
Strand 7	J	92	98	anti-parallel
Strand 8	J	62	67	anti-parallel
Strand 9	J	70	77	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	70	77	first strand
Strand 2	P	62	67	anti-parallel
Strand 3	P	92	98	anti-parallel
Strand 4	P	34	39	anti-parallel
Strand 5	Q	81	88	parallel
Strand 6	Q	46	53	anti-parallel
Strand 7	Q	103	115	anti-parallel
Strand 8	Q	14	26	anti-parallel
Strand 9	W	4	5	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	4	5	first strand
Strand 2	J	14	26	parallel
Strand 3	J	103	115	anti-parallel
Strand 4	J	46	53	anti-parallel
Strand 5	J	81	88	anti-parallel
Strand 6	I	34	39	parallel
Strand 7	I	92	98	anti-parallel
Strand 8	I	62	67	anti-parallel
Strand 9	I	70	77	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	70	77	first strand
Strand 2	O	62	67	anti-parallel
Strand 3	O	92	98	anti-parallel
Strand 4	O	34	39	anti-parallel
Strand 5	P	81	88	parallel
Strand 6	P	46	53	anti-parallel
Strand 7	P	103	115	anti-parallel
Strand 8	P	14	26	anti-parallel
Strand 9	V	4	5	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	4	5	first strand
Strand 2	I	14	26	parallel
Strand 3	I	103	115	anti-parallel
Strand 4	I	46	53	anti-parallel
Strand 5	I	81	88	anti-parallel
Strand 6	H	34	39	parallel
Strand 7	H	92	98	anti-parallel
Strand 8	H	62	67	anti-parallel
Strand 9	H	70	77	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	70	77	first strand
Strand 2	U	62	67	anti-parallel
Strand 3	U	92	98	anti-parallel
Strand 4	U	34	39	anti-parallel
Strand 5	O	81	88	parallel
Strand 6	O	46	53	anti-parallel
Strand 7	O	103	115	anti-parallel
Strand 8	O	14	26	anti-parallel
Strand 9	b	4	5	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	4	5	first strand
Strand 2	H	14	26	parallel
Strand 3	H	103	115	anti-parallel
Strand 4	H	46	53	anti-parallel
Strand 5	H	81	88	anti-parallel
Strand 6	N	34	39	parallel
Strand 7	N	92	98	anti-parallel
Strand 8	N	62	67	anti-parallel
Strand 9	N	70	77	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	70	77	first strand
Strand 2	T	62	67	anti-parallel
Strand 3	T	92	98	anti-parallel
Strand 4	T	34	39	anti-parallel
Strand 5	U	81	88	parallel
Strand 6	U	46	53	anti-parallel
Strand 7	U	103	115	anti-parallel
Strand 8	U	14	26	anti-parallel
Strand 9	a	4	5	parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	4	5	first strand
Strand 2	N	14	26	parallel
Strand 3	N	103	115	anti-parallel
Strand 4	N	46	53	anti-parallel
Strand 5	N	81	88	anti-parallel
Strand 6	M	34	39	parallel
Strand 7	M	92	98	anti-parallel
Strand 8	M	62	67	anti-parallel
Strand 9	M	70	77	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	70	77	first strand
Strand 2	S	62	67	anti-parallel
Strand 3	S	92	98	anti-parallel
Strand 4	S	34	39	anti-parallel
Strand 5	T	81	88	parallel
Strand 6	T	46	53	anti-parallel
Strand 7	T	103	115	anti-parallel
Strand 8	T	14	26	anti-parallel
Strand 9	Z	4	5	parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	4	5	first strand
Strand 2	M	14	26	parallel
Strand 3	M	103	115	anti-parallel
Strand 4	M	46	53	anti-parallel
Strand 5	M	81	88	anti-parallel
Strand 6	L	34	39	parallel
Strand 7	L	92	98	anti-parallel
Strand 8	L	62	67	anti-parallel
Strand 9	L	70	77	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	14	26	first strand
Strand 2	V	103	115	anti-parallel
Strand 3	V	46	53	anti-parallel
Strand 4	V	81	88	anti-parallel
Strand 5	b	34	39	parallel
Strand 6	b	92	98	anti-parallel
Strand 7	b	62	67	anti-parallel
Strand 8	b	70	77	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	70	77	first strand
Strand 2	V	62	67	anti-parallel
Strand 3	V	92	98	anti-parallel
Strand 4	V	34	39	anti-parallel
Strand 5	W	81	88	parallel
Strand 6	W	46	53	anti-parallel
Strand 7	W	103	115	anti-parallel
Strand 8	W	14	26	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	70	77	first strand
Strand 2	W	62	67	anti-parallel
Strand 3	W	92	98	anti-parallel
Strand 4	W	34	39	anti-parallel
Strand 5	X	81	88	parallel
Strand 6	X	46	53	anti-parallel
Strand 7	X	103	115	anti-parallel
Strand 8	X	14	26	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	70	77	first strand
Strand 2	X	62	67	anti-parallel
Strand 3	X	92	98	anti-parallel
Strand 4	X	34	39	anti-parallel
Strand 5	Y	81	88	parallel
Strand 6	Y	46	53	anti-parallel
Strand 7	Y	103	115	anti-parallel
Strand 8	Y	14	26	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	70	77	first strand
Strand 2	Y	62	67	anti-parallel
Strand 3	Y	92	98	anti-parallel
Strand 4	Y	34	39	anti-parallel
Strand 5	Z	81	88	parallel
Strand 6	Z	46	53	anti-parallel
Strand 7	Z	103	115	anti-parallel
Strand 8	Z	14	26	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	70	77	first strand
Strand 2	Z	62	67	anti-parallel
Strand 3	Z	92	98	anti-parallel
Strand 4	Z	34	39	anti-parallel
Strand 5	a	81	88	parallel
Strand 6	a	46	53	anti-parallel
Strand 7	a	103	115	anti-parallel
Strand 8	a	14	26	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	70	77	first strand
Strand 2	a	62	67	anti-parallel
Strand 3	a	92	98	anti-parallel
Strand 4	a	34	39	anti-parallel
Strand 5	b	81	88	parallel
Strand 6	b	46	53	anti-parallel
Strand 7	b	103	115	anti-parallel
Strand 8	b	14	26	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	5	first strand
Strand 2	B	14	26	parallel
Strand 3	B	103	115	anti-parallel
Strand 4	B	46	53	anti-parallel
Strand 5	B	81	88	anti-parallel
Strand 6	A	34	39	parallel
Strand 7	A	92	98	anti-parallel
Strand 8	A	62	67	anti-parallel
Strand 9	A	70	77	anti-parallel

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There are 9 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	5	first strand
Strand 2	C	14	26	parallel
Strand 3	C	103	115	anti-parallel
Strand 4	C	46	53	anti-parallel
Strand 5	C	81	88	anti-parallel
Strand 6	B	34	39	parallel
Strand 7	B	92	98	anti-parallel
Strand 8	B	62	67	anti-parallel
Strand 9	B	70	77	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	5	first strand
Strand 2	D	14	26	parallel
Strand 3	D	103	115	anti-parallel
Strand 4	D	46	53	anti-parallel
Strand 5	D	81	88	anti-parallel
Strand 6	C	34	39	parallel
Strand 7	C	92	98	anti-parallel
Strand 8	C	62	67	anti-parallel
Strand 9	C	70	77	anti-parallel

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There are 9 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	5	first strand
Strand 2	E	14	26	parallel
Strand 3	E	103	115	anti-parallel
Strand 4	E	46	53	anti-parallel
Strand 5	E	81	88	anti-parallel
Strand 6	D	34	39	parallel
Strand 7	D	92	98	anti-parallel
Strand 8	D	62	67	anti-parallel
Strand 9	D	70	77	anti-parallel

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There are 9 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	F	14	26	parallel
Strand 3	F	103	115	anti-parallel
Strand 4	F	46	53	anti-parallel
Strand 5	F	81	88	anti-parallel
Strand 6	E	34	39	parallel
Strand 7	E	92	98	anti-parallel
Strand 8	E	62	67	anti-parallel
Strand 9	E	70	77	anti-parallel

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There are 9 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	5	first strand
Strand 2	G	14	26	parallel
Strand 3	G	103	115	anti-parallel
Strand 4	G	46	53	anti-parallel
Strand 5	G	81	88	anti-parallel
Strand 6	F	34	39	parallel
Strand 7	F	92	98	anti-parallel
Strand 8	F	62	67	anti-parallel
Strand 9	F	70	77	anti-parallel

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There are 9 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	5	first strand
Strand 2	A	14	26	parallel
Strand 3	A	103	115	anti-parallel
Strand 4	A	46	53	anti-parallel
Strand 5	A	81	88	anti-parallel
Strand 6	G	34	39	parallel
Strand 7	G	92	98	anti-parallel
Strand 8	G	62	67	anti-parallel
Strand 9	G	70	77	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PDZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PDZ