Analysis of interatomic Contacts of Structural Units in PDB entry:
8PE2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PE2 entry

There are 2 chains in PDB entry 8PE2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 19GLN 469
B
 GLN 1SER 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 8PE2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
68 82Right-handed alpha
Helix 2
AA2
A
98 108Right-handed alpha
Helix 3
AA3
A
131 146Right-handed alpha
Helix 4
AA4
A
163 168Right-handed 310
Helix 5
AA5
A
169 187Right-handed alpha
Helix 6
AA6
A
205 215Right-handed alpha
Helix 7
AA7
A
217 221Right-handed 310
Helix 8
AA8
A
242 251Right-handed alpha
Helix 9
AA9
A
273 280Right-handed alpha
Helix 10
AB1
A
315 327Right-handed alpha
Helix 11
AB2
A
334 338Right-handed 310
Helix 12
AB3
A
366 377Right-handed alpha
Helix 13
AB4
A
386 388Right-handed 310
Helix 14
AB5
A
389 399Right-handed alpha
Helix 15
AB6
A
403 406Right-handed 310
Helix 16
AB7
A
417 421Right-handed 310
Helix 17
AB8
A
422 438Right-handed alpha
Helix 18
AB9
A
441 445Right-handed 310
Helix 19
AC1
A
461 469Right-handed alpha
Helix 20
AC2
B
61 64Right-handed 310
Helix 21
AC3
B
86 90Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 8PE2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
29 32anti-parallel
Strand 3
A
38 39anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
A
86 89parallel
Strand 3
A
111 115parallel
Strand 4
A
151 158parallel
Strand 5
A
194 199parallel
Strand 6
A
225 228parallel
Strand 7
A
257 262parallel
Strand 8
A
287 292parallel
Strand 9
A
41 45parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 308first strand
Strand 2
A
311 314anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 381first strand
Strand 2
A
451 453anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 409first strand
Strand 2
A
414 415anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
18 26anti-parallel
Strand 3
B
77 82anti-parallel
Strand 4
B
67 72anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
115 119parallel
Strand 3
B
91 100anti-parallel
Strand 4
B
30 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
57 59anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
115 119parallel
Strand 3
B
91 100anti-parallel
Strand 4
B
108 111anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il