Analysis of interatomic Contacts of Structural Units in PDB entry:
8PE4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PE4 entry

There are 2 chains in PDB entry 8PE4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	THR 651
B	MET 1	THR 651

There are 41 helices in PDB entry 8PE4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	9	Right-handed alpha
Helix 2	AA2	A	74	78	Right-handed 310
Helix 3	AA3	A	85	91	Right-handed alpha
Helix 4	AA4	A	106	112	Right-handed alpha
Helix 5	AA5	A	120	139	Right-handed alpha
Helix 6	AA6	A	207	219	Right-handed alpha
Helix 7	AA7	A	227	231	Right-handed 310
Helix 8	AA8	A	249	256	Right-handed alpha
Helix 9	AA9	A	268	284	Right-handed alpha
Helix 10	AB1	A	285	300	Right-handed alpha
Helix 11	AB2	A	307	310	Right-handed 310
Helix 12	AB3	A	311	316	Right-handed alpha
Helix 13	AB4	A	345	357	Right-handed alpha
Helix 14	AB5	A	359	384	Right-handed alpha
Helix 15	AB6	A	401	403	Right-handed 310
Helix 16	AB7	A	404	415	Right-handed alpha
Helix 17	AB8	A	430	434	Right-handed 310
Helix 18	AB9	A	506	520	Right-handed alpha
Helix 19	AC1	A	549	554	Right-handed alpha
Helix 20	AC2	A	612	616	Right-handed 310
Helix 21	AC3	B	2	6	Right-handed alpha
Helix 22	AC4	B	9	11	Right-handed 310
Helix 23	AC5	B	85	92	Right-handed alpha
Helix 24	AC6	B	105	110	Right-handed alpha
Helix 25	AC7	B	120	139	Right-handed alpha
Helix 26	AC8	B	207	218	Right-handed alpha
Helix 27	AC9	B	249	256	Right-handed alpha
Helix 28	AD1	B	261	265	Right-handed 310
Helix 29	AD2	B	268	284	Right-handed alpha
Helix 30	AD3	B	285	301	Right-handed alpha
Helix 31	AD4	B	310	316	Right-handed alpha
Helix 32	AD5	B	332	336	Right-handed 310
Helix 33	AD6	B	345	357	Right-handed alpha
Helix 34	AD7	B	358	383	Right-handed alpha
Helix 35	AD8	B	396	400	Right-handed 310
Helix 36	AD9	B	401	403	Right-handed 310
Helix 37	AE1	B	404	414	Right-handed alpha
Helix 38	AE2	B	430	434	Right-handed 310
Helix 39	AE3	B	506	520	Right-handed alpha
Helix 40	AE4	B	549	554	Right-handed alpha
Helix 41	AE5	B	630	634	Right-handed 310

There are 17 sheets in PDB entry 8PE4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	303	first strand
Strand 2	A	41	54	anti-parallel
Strand 3	A	25	38	anti-parallel
Strand 4	A	588	599	anti-parallel
Strand 5	A	488	490	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	319	322	parallel
Strand 3	A	428	429	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	151	first strand
Strand 2	A	155	157	anti-parallel
Strand 3	A	445	446	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	241	243	parallel
Strand 3	A	200	202	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	344	first strand
Strand 2	A	623	626	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	419	first strand
Strand 2	A	636	640	anti-parallel
Strand 3	A	645	649	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	443	first strand
Strand 2	A	458	462	anti-parallel
Strand 3	A	454	455	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	497	first strand
Strand 2	A	502	505	anti-parallel
Strand 3	A	559	567	anti-parallel
Strand 4	A	521	526	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	16	first strand
Strand 2	B	609	612	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	27	first strand
Strand 2	B	52	54	anti-parallel
Strand 3	B	302	304	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	48	first strand
Strand 2	B	29	38	anti-parallel
Strand 3	B	588	597	anti-parallel
Strand 4	B	488	490	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	319	321	parallel
Strand 3	B	428	429	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	202	first strand
Strand 2	B	241	243	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	344	first strand
Strand 2	B	623	626	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	419	first strand
Strand 2	B	636	640	anti-parallel
Strand 3	B	645	649	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	443	first strand
Strand 2	B	458	462	anti-parallel
Strand 3	B	454	455	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	503	505	first strand
Strand 2	B	559	567	anti-parallel
Strand 3	B	521	526	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PE4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PE4