Analysis of interatomic Contacts of Structural Units in PDB entry:
8PE9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PE9 entry

There are 3 chains in PDB entry 8PE9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 188ASN 370
H
 GLN 23LYS 244
L
 ILE 24GLU 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8PE9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
229 233Right-handed 310
Helix 2
AA2
A
261 263Right-handed 310
Helix 3
AA3
A
290 294Right-handed 310
Helix 4
AA4
H
83 87Right-handed 310
Helix 5
AA5
H
108 112Right-handed 310
Helix 6
AA6
L
145 150Right-handed alpha
Helix 7
AA7
L
205 211Right-handed alpha
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There are 14 sheets in PDB entry 8PE9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 195first strand
Strand 2
A
267 287anti-parallel
Strand 3
A
356 368anti-parallel
Strand 4
A
256 259anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 195first strand
Strand 2
A
267 287anti-parallel
Strand 3
A
332 351anti-parallel
Strand 4
A
301 306anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
208 209anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
223 224anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
25 28first strand
Strand 2
H
41 47anti-parallel
Strand 3
H
99 103anti-parallel
Strand 4
H
90 94anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
33 34first strand
Strand 2
H
137 141parallel
Strand 3
H
113 120anti-parallel
Strand 4
H
55 61anti-parallel
Strand 5
H
67 74anti-parallel
Strand 6
H
77 79anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
33 34first strand
Strand 2
H
137 141parallel
Strand 3
H
113 120anti-parallel
Strand 4
H
130 132anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
151 154first strand
Strand 2
H
167 175anti-parallel
Strand 3
H
206 213anti-parallel
Strand 4
H
193 195anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
151 154first strand
Strand 2
H
167 175anti-parallel
Strand 3
H
206 213anti-parallel
Strand 4
H
199 200anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
181 184first strand
Strand 2
H
225 230anti-parallel
Strand 3
H
235 240anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
26 29first strand
Strand 2
L
41 51anti-parallel
Strand 3
L
84 97anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
32 35first strand
Strand 2
L
124 128parallel
Strand 3
L
107 111anti-parallel
Strand 4
L
55 60anti-parallel
Strand 5
L
67 72anti-parallel
Strand 6
L
75 76anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
136 140first strand
Strand 2
L
151 161anti-parallel
Strand 3
L
195 204anti-parallel
Strand 4
L
181 182anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
175 177first strand
Strand 2
L
167 172anti-parallel
Strand 3
L
214 219anti-parallel
Strand 4
L
227 231anti-parallel
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