Analysis of interatomic Contacts of Structural Units in PDB entry:
8PEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PEE entry

There is 1 chain in PDB entry 8PEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 32LYS 1260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8PEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 42Right-handed 310
Helix 2
AA2
A
43 82Right-handed alpha
Helix 3
AA3
A
87 92Right-handed alpha
Helix 4
AA4
A
99 152Right-handed alpha
Helix 5
AA5
A
155 162Right-handed alpha
Helix 6
AA6
A
164 207Right-handed alpha
Helix 7
AA7
A
207 256Right-handed alpha
Helix 8
AA8
A
256 264Right-handed alpha
Helix 9
AA9
A
265 319Right-handed alpha
Helix 10
AB1
A
323 344Right-handed alpha
Helix 11
AB2
A
345 365Right-handed alpha
Helix 12
AB3
A
397 401Right-handed 310
Helix 13
AB4
A
430 437Right-handed alpha
Helix 14
AB5
A
458 465Right-handed alpha
Helix 15
AB6
A
479 486Right-handed alpha
Helix 16
AB7
A
492 501Right-handed alpha
Helix 17
AB8
A
528 543Right-handed alpha
Helix 18
AB9
A
564 574Right-handed alpha
Helix 19
AC1
A
584 591Right-handed alpha
Helix 20
AC2
A
694 701Right-handed alpha
Helix 21
AC3
A
707 737Right-handed alpha
Helix 22
AC4
A
740 742Right-handed 310
Helix 23
AC5
A
743 795Right-handed alpha
Helix 24
AC6
A
796 802Right-handed alpha
Helix 25
AC7
A
806 816Right-handed alpha
Helix 26
AC8
A
821 826Right-handed alpha
Helix 27
AC9
A
826 899Right-handed alpha
Helix 28
AD1
A
899 906Right-handed alpha
Helix 29
AD2
A
909 962Right-handed alpha
Helix 30
AD3
A
966 990Right-handed alpha
Helix 31
AD4
A
998 1010Right-handed alpha
Helix 32
AD5
A
1068 1072Right-handed 310
Helix 33
AD6
A
1074 1080Right-handed alpha
Helix 34
AD7
A
1101 1107Right-handed alpha
Helix 35
AD8
A
1122 1129Right-handed alpha
Helix 36
AD9
A
1130 1132Right-handed 310
Helix 37
AE1
A
1140 1149Right-handed alpha
Helix 38
AE2
A
1150 1155Right-handed alpha
Helix 39
AE3
A
1165 1169Right-handed 310
Helix 40
AE4
A
1173 1188Right-handed alpha
Helix 41
AE5
A
1199 1203Right-handed 310
Helix 42
AE6
A
1206 1221Right-handed alpha
Helix 43
AE7
A
1229 1236Right-handed alpha
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There are 6 sheets in PDB entry 8PEE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 391first strand
Strand 2
A
410 412anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 395first strand
Strand 2
A
406 407anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 468first strand
Strand 2
A
547 551parallel
Strand 3
A
577 581parallel
Strand 4
A
419 421parallel
Strand 5
A
593 594parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1031 1032first strand
Strand 2
A
1091 1092anti-parallel
Strand 3
A
1095 1096anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1034 1038first strand
Strand 2
A
1048 1053anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1063 1064first strand
Strand 2
A
1223 1226parallel
Strand 3
A
1192 1195parallel
Strand 4
A
1109 1111parallel
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