Analysis of interatomic Contacts of Structural Units in PDB entry:
8PEH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PEH entry

There are 6 chains in PDB entry 8PEH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 580MET 732
B
 ALA 734SER 877
C
 SER 580MET 732
C
 ALA 734ASN 875
A
 SER 578MET 732
A
 ALA 734ASN 875
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8PEH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
585 594Right-handed alpha
Helix 2
AA2
B
631 645Right-handed alpha
Helix 3
AA3
B
674 681Right-handed alpha
Helix 4
AA4
B
682 687Right-handed alpha
Helix 5
AA5
B
690 710Right-handed alpha
Helix 6
AA6
B
722 724Right-handed 310
Helix 7
AA7
B
738 742Right-handed 310
Helix 8
AA8
B
767 772Right-handed alpha
Helix 9
AA9
B
775 793Right-handed alpha
Helix 10
AB1
B
802 806Right-handed 310
Helix 11
AB2
B
807 818Right-handed alpha
Helix 12
AB3
B
820 824Right-handed 310
Helix 13
AB4
B
826 830Right-handed 310
Helix 14
AB5
B
834 849Right-handed alpha
Helix 15
AB6
B
852 856Right-handed 310
Helix 16
AB7
B
858 875Right-handed alpha
Helix 17
AB8
C
585 594Right-handed alpha
Helix 18
AB9
C
631 645Right-handed alpha
Helix 19
AC1
C
674 681Right-handed alpha
Helix 20
AC2
C
681 687Right-handed alpha
Helix 21
AC3
C
690 710Right-handed alpha
Helix 22
AC4
C
722 724Right-handed 310
Helix 23
AC5
C
767 772Right-handed alpha
Helix 24
AC6
C
775 793Right-handed alpha
Helix 25
AC7
C
802 806Right-handed 310
Helix 26
AC8
C
807 818Right-handed alpha
Helix 27
AC9
C
820 825Right-handed 310
Helix 28
AD1
C
826 830Right-handed 310
Helix 29
AD2
C
834 849Right-handed alpha
Helix 30
AD3
C
852 856Right-handed 310
Helix 31
AD4
C
858 875Right-handed alpha
Helix 32
AD5
A
585 593Right-handed alpha
Helix 33
AD6
A
626 629Right-handed 310
Helix 34
AD7
A
631 643Right-handed alpha
Helix 35
AD8
A
674 681Right-handed alpha
Helix 36
AD9
A
682 686Right-handed 310
Helix 37
AE1
A
690 710Right-handed alpha
Helix 38
AE2
A
722 724Right-handed 310
Helix 39
AE3
A
767 772Right-handed alpha
Helix 40
AE4
A
775 793Right-handed alpha
Helix 41
AE5
A
802 806Right-handed 310
Helix 42
AE6
A
807 818Right-handed alpha
Helix 43
AE7
A
820 824Right-handed 310
Helix 44
AE8
A
826 830Right-handed 310
Helix 45
AE9
A
834 849Right-handed alpha
Helix 46
AF1
A
852 856Right-handed 310
Helix 47
AF2
A
858 875Right-handed alpha
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There are 8 sheets in PDB entry 8PEH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
582 583first strand
Strand 2
B
655 659parallel
Strand 3
B
662 668anti-parallel
Strand 4
B
618 622anti-parallel
Strand 5
B
607 612anti-parallel
Strand 6
B
599 602anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
716 717first strand
Strand 2
B
743 744anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
726 728first strand
Strand 2
B
734 736anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
582 583first strand
Strand 2
C
655 659parallel
Strand 3
C
662 668anti-parallel
Strand 4
C
618 625anti-parallel
Strand 5
C
607 612anti-parallel
Strand 6
C
599 602anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
716 717first strand
Strand 2
C
743 744anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
726 728first strand
Strand 2
C
734 736anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 583first strand
Strand 2
A
655 659parallel
Strand 3
A
662 668anti-parallel
Strand 4
A
618 624anti-parallel
Strand 5
A
606 612anti-parallel
Strand 6
A
599 601anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
726 728first strand
Strand 2
A
734 736anti-parallel
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