Analysis of interatomic Contacts of Structural Units in PDB entry:
8PEK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PEK entry

There are 2 chains in PDB entry 8PEK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 43LYS 140
B
 VAL 43LYS 140
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8PEK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
82 94Right-handed alpha
Helix 2
AA2
A
111 126Right-handed alpha
Helix 3
AA3
A
135 137Right-handed 310
Helix 4
AA4
B
82 94Right-handed alpha
Helix 5
AA5
B
111 126Right-handed alpha
Helix 6
AA6
B
135 137Right-handed 310
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There is 1 sheet (AA1) in PDB entry 8PEK.

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
74 76anti-parallel
Strand 3
A
64 68anti-parallel
Strand 4
A
102 106parallel
Strand 5
A
129 133parallel
Strand 6
B
44 48anti-parallel
Strand 7
A
44 48anti-parallel
Strand 8
B
129 133anti-parallel
Strand 9
B
102 106parallel
Strand 10
B
64 68parallel
Strand 11
B
74 76anti-parallel
Strand 12
B
79 81anti-parallel
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